User: husensofteng

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husensofteng20
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20
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New User
Location:
Stockholm, Sweden
Last seen:
1 day, 12 hours ago
Joined:
8 months, 1 week ago
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h***********@gmail.com

Posts by husensofteng

<prev • 3 results • page 1 of 1 • next >
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Tool: Annotation of noncoding variants and transcription factor motifs
... [funMotifs][1] is a web-based tool designed for annotating noncoding variants and genomic regions We have collected ChIP-seq, DNase-I, and other assays from ENCODE, FANTOM, RoadMap epigenomics and other data sources. We have used the data to annotate motifs of 510 transcription factors in 14 tissue ...
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Comment: C: Compute average score across multiple bed files
... It is not very clear what do you average on (the number of bases, peaks, files)? It seems to me as count and not mean, can you elaborate more how does chr1:10-11 gets score of 1 as average and how chr1:12-14 gets 2? ...
written 6 months ago by husensofteng20
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GATK Interval list for processing mouse genome WGS
... I am trying to apply the GATK best practices for calling variants but from mice WGS data. According to [GATK][1], one of the reasons for using an interval list in processing WGS data is "to exclude regions that have bad or uninformative data where a tool is getting stuck”. [GATK bundle][2] includes ...
genome gatk grcm38 wgs written 7 months ago by husensofteng20

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