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Comment: Comment: Pandas Data Frame
18 months ago by husensofteng ▴ 410
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473
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Comment: Comment: identification of overlapped, proximal and distal gene for peak regions
18 months ago by husensofteng ▴ 410
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1.5k
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Comment: Comment: Getting VCF file for the 1000 genome project with rsid
2.2 years ago by husensofteng ▴ 410
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1.2k
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Answer: Answer: I'm not sure my Bulk RNAseq read counts extracted from fastq file are correct
2.5 years ago by husensofteng ▴ 410
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1.1k
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Answer: Answer: Naïve question about LC-MS/MS proteomic datasets : looking for ressources, studi
2.5 years ago by husensofteng ▴ 410
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1.0k
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Answer: Answer: how to merge two files in two columns using bash command lines
2.8 years ago by husensofteng ▴ 410
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1
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2.4k
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Comment: Comment: How to find overlapping coordinates of a gtf file
2.8 years ago by husensofteng ▴ 410
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1.6k
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Comment: C: bedtools multiple BAM files
3.4 years ago by husensofteng ▴ 410
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1.2k
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Comment: C: Sequence Retrieval of SARS-CoV Complete Genomes
3.4 years ago by husensofteng ▴ 410
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1.1k
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Comment: C: Visualizing alternative splicing events
3.5 years ago by husensofteng ▴ 410
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1
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1.1k
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Comment: C: Visualizing alternative splicing events
3.5 years ago by husensofteng ▴ 410
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1.1k
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Comment: C: Strandness of ENCODE RNA-seq data
3.5 years ago by husensofteng ▴ 410
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1.1k
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Comment: C: Strandness of ENCODE RNA-seq data
3.5 years ago by husensofteng ▴ 410
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4
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1.1k
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Strandness of ENCODE RNA-seq data
RNA-Seq ENCODE Assembly
3.5 years ago by husensofteng ▴ 410
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1.1k
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Comment: C: Multi-records genbank to CDS
3.6 years ago by husensofteng ▴ 410
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1.0k
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Comment: C: analyse bam file
3.7 years ago by husensofteng ▴ 410
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1.0k
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Answer: A: Create a database of RefSeq genes
3.7 years ago by husensofteng ▴ 410
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607
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Comment: C: protein database and ensembl
3.7 years ago by husensofteng ▴ 410
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607
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Comment: C: protein database and ensembl
3.7 years ago by husensofteng ▴ 410
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1.2k
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Comment: C: To remove variants that encode for PE-PPE proteins from .vcf file
3.7 years ago by husensofteng ▴ 410
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0
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711
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Comment: C: Intron retension calculation (non-model organism)?
3.7 years ago by husensofteng ▴ 410
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0
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1.2k
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Comment: C: Whole Genome Sequencing Data Annotation
3.8 years ago by husensofteng ▴ 410
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4.9k
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Comment: C: I get this error while creating database on BLAST: BLAST Database creation error
3.8 years ago by husensofteng ▴ 410
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3.6k
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Comment: C: Getting coding sequence length
3.8 years ago by husensofteng ▴ 410
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664
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Comment: C: Searching for introns within 5'UTRs
3.8 years ago by husensofteng ▴ 410
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1.4k
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Comment: C: Biopython SeqIO.parse not functioning for all entries in a seq
3.8 years ago by husensofteng ▴ 410
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0
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742
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Comment: C: Searching for genomic coordinates of histone/chromatin states in Roadmap epigeno
3.8 years ago by husensofteng ▴ 410
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1
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1.4k
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Answer: C: genomic features 3'utr and 5'utr
3.8 years ago by husensofteng ▴ 410
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1
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810
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Comment: C: How to get the best overlap
3.9 years ago by husensofteng ▴ 410
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1
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980
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Answer: C: Detecting potentially unannotated genes from RNA-seq alignments?
3.9 years ago by husensofteng ▴ 410
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1.4k
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Answer: A: per sample mean coverage and standard deviation
3.9 years ago by husensofteng ▴ 410
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0
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4.6k
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Comment: C: Clarification of good pipeline for transcriptome assembly of RNA-seq data
3.9 years ago by husensofteng ▴ 410
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4
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3.0k
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GATK Interval list for processing mouse genome WGS
GATK WGS GRCm38 genome
updated 4.4 years ago by 13k • written 5.8 years ago by ▴ 410
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2.0k
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Comment: C: Genomic coordinates from GENCODE annotation file
4.8 years ago by husensofteng ▴ 410
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6.1k
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Comment: C: convert genome file to transcriptome file
4.8 years ago by husensofteng ▴ 410
8
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1
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6.1k
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Answer: A: convert genome file to transcriptome file
4.8 years ago by husensofteng ▴ 410
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1
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2.5k
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Answer: A: Keeping only common variants in the merged VCF file
4.9 years ago by husensofteng ▴ 410
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1
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3.2k
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Answer: A: get GTEx mean expression by tissue
4.9 years ago by husensofteng ▴ 410
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1.1k
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Comment: C: Checking regions with high density of SNPs
4.9 years ago by husensofteng ▴ 410
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2.4k
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Comment: C: Stringtie merge assembly with extra transcripts
4.9 years ago by husensofteng ▴ 410
1
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1
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3.6k
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Answer: A: Mapping SNP position to gff file
updated 4.9 years ago by 81k • written 4.9 years ago by ▴ 410
1
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1
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2.4k
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Answer: A: Stringtie merge assembly with extra transcripts
5.0 years ago by husensofteng ▴ 410
0
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0
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893
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Job: Front-end developer for research and cancer personalized medicine platforms
web-portal front-end javascript HTML
updated 10 months ago by 43k • written 5.0 years ago by ▴ 410
1
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1.3k
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Comment: C: compare two columns of two files
5.0 years ago by husensofteng ▴ 410
1
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0
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1.4k
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Comment: C: Annotation of noncoding variants and transcription factor motifs
5.1 years ago by husensofteng ▴ 410
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5.6k
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Answer: A: How to access specifically 30x NA12878 sequencing runs
5.1 years ago by husensofteng ▴ 410
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8.0k
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Answer: A: Example datasets for RNA-Seq Differential Expression Analysis
5.1 years ago by husensofteng ▴ 410
3
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1.1k
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Answer: A: Trascription factor binding site prediction
5.1 years ago by husensofteng ▴ 410
3
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2
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1.4k
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Tool: Annotation of noncoding variants and transcription factor motifs
TF-Motifs regulatory noncoding-variants
updated 10 months ago by 43k • written 5.3 years ago by ▴ 410
1
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0
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5.2k
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Comment: C: Compute average score across multiple bed files
5.7 years ago by husensofteng ▴ 410
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