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Comment: C: CombineGVCFs + GenotypeGVCFs for Freebayes gVCF files?
7.2 years ago by William ★ 5.3k
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1.6k
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Comment: C: Senior Software Developer
7.2 years ago by William ★ 5.3k
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2.9k
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Comment: C: How to filter a VCF on a set of samples having genotypes containing the minor al
7.3 years ago by William ★ 5.3k
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1
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2.9k
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Comment: C: How to filter a VCF on a set of samples having genotypes containing the minor al
7.3 years ago by William ★ 5.3k
1
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1
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4.6k
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Comment: C: Best tools for lifting over genome coordinates for non model organism (custom) r
7.4 years ago by William ★ 5.3k
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1
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44k
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Comment: C: How to filter vcf file on minimum genotype depth and quality for each sample
7.8 years ago by William ★ 5.3k
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1
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44k
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Comment: C: How to filter vcf file on minimum genotype depth and quality for each sample
7.8 years ago by William ★ 5.3k
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1
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2.6k
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Comment: C: 10 to 1000X speedup of BWA read alignment trough compressive mapping: MIT CORA
8.0 years ago by William ★ 5.3k
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1
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4.8k
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Comment: C: Output per variant and per sample heterozygosity fraction from VCF.
8.1 years ago by William ★ 5.3k
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0
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4.8k
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Comment: C: Output per variant and per sample heterozygosity fraction from VCF.
8.1 years ago by William ★ 5.3k
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0
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2.8k
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Comment: C: How to plot a histogram for billions of genotype quality values?
8.1 years ago by William ★ 5.3k
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4.2k
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Comment: C: Cnvnator Genotype Regions Error : Can'T Find Bin 1000
8.5 years ago by William ★ 5.3k
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0
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5.1k
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Comment: C: How to annotate SNP variant records in a vcf file with IDs from a bed file?
8.5 years ago by William ★ 5.3k
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0
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3.6k
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Comment: Comment: BCFTools view equivelent of GATK -T SelectVariants -sn sample_x --excludeNonVari
updated 20 months ago by 43k • written 8.6 years ago by ★ 5.3k
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3.6k
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Comment: Comment: BCFTools view equivelent of GATK -T SelectVariants -sn sample_x --excludeNonVari
updated 20 months ago by 43k • written 8.6 years ago by ★ 5.3k
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0
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6.3k
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Comment: C: Perl6 and the Future of Bioinformatics - Compatibility and Integration
8.7 years ago by William ★ 5.3k
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1
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3.8k
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Comment: C: Official specs and API's for proteomics data (like Adam, VCF, HTS-JDK) (both fil
9.3 years ago by William ★ 5.3k
1
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1
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25k
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Comment: Comment: Genomics is not Special. Computational Biologists are reinventing the wheel for
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 5.3k
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0
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20k
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Comment: Comment: Why is Hadoop not used a lot in bio-informatics?
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 5.3k
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0
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6.1k
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Comment: Comment: Do freeBayes and platypus support gVCF (ie incremental variant calling for large
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 5.3k
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4.6k
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Comment: C: Open Source Variant Caller comparable to GATK Haplotype Caller?
9.6 years ago by William ★ 5.3k
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0
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4.7k
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Comment: Comment: Principal component analysis for proteomics data ( like SNPRelate )
updated 2.3 years ago by 43k • written 9.7 years ago by ★ 5.3k
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1
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9.1k
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Comment: Comment: Bio-informatics salary distribution versus Java salary distribution in the UK
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 5.3k
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0
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9.1k
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Comment: C: Bio-informatics salary distribution versus Java salary distribution in the UK
9.7 years ago by William ★ 5.3k
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0
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3.2k
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Comment: C: Keats: A Scala (And Scalable) Port Of The Picard Genomics Library Of The Broad
10.1 years ago by William ★ 5.3k
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2
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6.7k
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Comment: C: Standard Post Variant Call (Vcf) Analysis That Work Out Of The Box
10.5 years ago by William ★ 5.3k
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0
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4.0k
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Comment: C: Best Way To View Haplotypes In Non-Human Organisms?
10.5 years ago by William ★ 5.3k
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0
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34k
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Comment: C: Multi-Sample Vcf To Phylogenetic Tree.
10.6 years ago by William ★ 5.3k
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1
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7.2k
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Comment: C: Sambamba: High Performance Alternative For Samtools And Picard For Indexing, Sor
10.6 years ago by William ★ 5.3k
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0
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7.2k
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Comment: C: Sambamba: High Performance Alternative For Samtools And Picard For Indexing, Sor
10.6 years ago by William ★ 5.3k
0
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1
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25k
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Comment: C: Difference Between Somatic And Germline Variant Calling?
10.6 years ago by William ★ 5.3k
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1
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25k
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Comment: C: Difference Between Somatic And Germline Variant Calling?
10.6 years ago by William ★ 5.3k
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0
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3.4k
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Comment: C: Cnvnator Deletion Calls All Based On Mapping Quality Zero Reads?
10.7 years ago by William ★ 5.3k
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0
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3.0k
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Comment: C: Wgs Coverage
10.7 years ago by William ★ 5.3k
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0
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2.6k
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Comment: C: Breakdancer Github Recursive Clone Fails , Unable To Clone Submodule "Build Como
10.7 years ago by William ★ 5.3k
0
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1
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14k
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Comment: C: Samtools Sort Set Max Memory , Value In Bytes, Kb, Mb Or Gb ?
10.7 years ago by William ★ 5.3k
0
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1
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14k
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Comment: C: Samtools Sort Set Max Memory , Value In Bytes, Kb, Mb Or Gb ?
10.7 years ago by William ★ 5.3k
0
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1
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14k
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Comment: C: Samtools Sort Set Max Memory , Value In Bytes, Kb, Mb Or Gb ?
10.7 years ago by William ★ 5.3k
0
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1
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14k
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Comment: C: Samtools Sort Set Max Memory , Value In Bytes, Kb, Mb Or Gb ?
10.7 years ago by William ★ 5.3k
0
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0
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8.9k
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Comment: C: Transition/Transversion Ratio From Fastq Files
10.8 years ago by William ★ 5.3k
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0
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4.5k
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Comment: C: What Do You Expect As The False Positive And Negative Rate For Snp'S And Indels
10.8 years ago by William ★ 5.3k
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0
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4.5k
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Comment: C: What Do You Expect As The False Positive And Negative Rate For Snp'S And Indels
10.8 years ago by William ★ 5.3k
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0
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5.3k
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Comment: C: How To Select The Top 30% Variants (Based On Quality) From A Vcf File?
10.8 years ago by William ★ 5.3k
1
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1
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5.3k
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Comment: C: How To Select The Top 30% Variants (Based On Quality) From A Vcf File?
10.8 years ago by William ★ 5.3k
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2
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14k
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Comment: C: Extract Coverage Track From Bam To Bed File
10.8 years ago by William ★ 5.3k
0
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0
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14k
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Comment: C: Extract Coverage Track From Bam To Bed File
10.8 years ago by William ★ 5.3k
0
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0
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15k
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Comment: C: Aligning Sequence Reads, Clone Sequences And Assembly Contigs With Bwa-Mem
10.9 years ago by William ★ 5.3k
0
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0
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3.8k
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Comment: C: How To Call Variants (Snp, Indel, Sv) On A Bac Contig Aligned With Bwa Mem To A
10.9 years ago by William ★ 5.3k
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0
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6.3k
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Comment: C: Samtools Api: Sequence And Quality Are Inconsistent
10.9 years ago by William ★ 5.3k
0
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0
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5.3k
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Comment: C: How To Call Snp And Indel Based On A Sanger Sequences Based Bac Contig Vs Refere
10.9 years ago by William ★ 5.3k
140 results • Page 2 of 3
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