User: Dineshkumar K
Dineshkumar K • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- Kasaragod, Kerala, India
- Last seen:
- 1 week, 1 day ago
- Joined:
- 1 year, 7 months ago
- Email:
- d*************@gmail.com
Posts by Dineshkumar K
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... Thank you @genomix. However the test script itself showing this kind of error. I could not find out the way to fix it. ...
written 9 days ago by
Dineshkumar K • 40
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... I have been using `panX` tool for pan-genome analysis (My computer info: Ubuntu 16.04 LTS, 64 bit version). I followed the instructions mentioned in the manual and installed all the dependencies `(mcl, mafft, fastree, raxml, DIAMOND, treetime)`. After that, I ran the test as mentioned in the tool ma ...
written 9 days ago by
Dineshkumar K • 40
• updated
9 days ago by
genomax ♦ 87k
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... I regret for the same. ...
written 9 days ago by
Dineshkumar K • 40
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... Thank you @microfuge. I have one clarification, in the command line `maxPercentN` should be replaced by 30 or 30%? ...
written 10 days ago by
Dineshkumar K • 40
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... I agree @genomax, But these sequences are creating problems while alignment, that is why I would like to remove the same. I have good sum of viral genomes, therefore, I would like to keep precise base called genomes rather than the NNNN contains genomes. ...
written 10 days ago by
Dineshkumar K • 40
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... I have a fasta file, which consist of thousands of viral genomes. I need to remove poor quality genomes which contain more than 30% `NNNNNNN`. Therefore, kindly help me to do the same. ...
written 10 days ago by
Dineshkumar K • 40
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... I need to generate ultrametric tree from a rooted phylogenetic tree. Therefore, please suggest me any tool which can do the same.
Many thanks in advance. ...
written 6 months ago by
Dineshkumar K • 40
• updated
6 months ago by
Brice Sarver • 3.5k
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... Thank you @lieven.sterck for your valuable suggestion. ...
written 6 months ago by
Dineshkumar K • 40
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... Sorry for my misinterpretation. @shenwei356 suggestion works well. ...
written 6 months ago by
Dineshkumar K • 40
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... Dear @ lieven.sterck,
Here, I showed an example sequence. But, in reality, I have multiple lined fasta file. All the sequences are not in single line. ...
written 6 months ago by
Dineshkumar K • 40
Latest awards to Dineshkumar K
Epic Question
5 months ago,
created a question with more than 10,000 views.
For devtools Installation error in R (version 3.5.3)?
Popular Question
5 months ago,
created a question with more than 1,000 views.
For How to convert Multiple sequence alignment format (fasta, Mega etc.,) to binary MSA fasta format for gene gain and loss analysis in GLOOME server?
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created a question with more than 1,000 views.
For How to specify Cut-off/parameters of sequence identity > 70% and query length > 40% in BLAST command line?
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5 months ago,
created a question with more than 1,000 views.
For devtools Installation error in R (version 3.5.3)?
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5 months ago,
created a question with more than 1,000 views.
For How to extract a sequence from a multi-fasta file based on its position?
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8 months ago,
created a question with more than 1,000 views.
For How to count the length of fasta sequences?
Great Question
9 months ago,
created a question with more than 5,000 views.
For devtools Installation error in R (version 3.5.3)?
Centurion
9 months ago,
created 100 posts.
Popular Question
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created a question with more than 1,000 views.
For How to count the length of fasta sequences?
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created a question with more than 1,000 views.
For devtools Installation error in R (version 3.5.3)?
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