User: Dineshkumar K

gravatar for Dineshkumar K
Reputation:
40
Status:
New User
Location:
Kasaragod, Kerala, India
Last seen:
1 week, 1 day ago
Joined:
1 year, 7 months ago
Email:
d*************@gmail.com

Posts by Dineshkumar K

<prev • 132 results • page 1 of 14 • next >
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Comment: C: Error in pan-genome-analysis tool panX.
... Thank you @genomix. However the test script itself showing this kind of error. I could not find out the way to fix it. ...
written 9 days ago by Dineshkumar K40
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Error in pan-genome-analysis tool panX.
... I have been using `panX` tool for pan-genome analysis (My computer info: Ubuntu 16.04 LTS, 64 bit version). I followed the instructions mentioned in the manual and installed all the dependencies `(mcl, mafft, fastree, raxml, DIAMOND, treetime)`. After that, I ran the test as mentioned in the tool ma ...
genome bioinformatics python perl bash written 9 days ago by Dineshkumar K40 • updated 9 days ago by genomax87k
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Comment: C: How to remove poor quality sequences from a fasta file?
... I regret for the same. ...
written 9 days ago by Dineshkumar K40
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Comment: C: How to remove poor quality sequences from a fasta file?
... Thank you @microfuge. I have one clarification, in the command line `maxPercentN` should be replaced by 30 or 30%? ...
written 10 days ago by Dineshkumar K40
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Comment: C: How to remove poor quality sequences from a fasta file?
... I agree @genomax, But these sequences are creating problems while alignment, that is why I would like to remove the same. I have good sum of viral genomes, therefore, I would like to keep precise base called genomes rather than the NNNN contains genomes. ...
written 10 days ago by Dineshkumar K40
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How to remove poor quality sequences from a fasta file?
... I have a fasta file, which consist of thousands of viral genomes. I need to remove poor quality genomes which contain more than 30% `NNNNNNN`. Therefore, kindly help me to do the same. ...
perl python bash shell fasta written 10 days ago by Dineshkumar K40
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Is there any tool available to generate ultrametric tree from a rooted phylogenetic tree?
... I need to generate ultrametric tree from a rooted phylogenetic tree. Therefore, please suggest me any tool which can do the same. Many thanks in advance. ...
phylogeny perl python unix R written 6 months ago by Dineshkumar K40 • updated 6 months ago by Brice Sarver3.5k
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Comment: C: How to concatenate clustalw aligned fasta sequence?
... Thank you @lieven.sterck for your valuable suggestion. ...
written 6 months ago by Dineshkumar K40
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Comment: C: How to concatenate clustalw aligned fasta sequence?
... Sorry for my misinterpretation. @shenwei356 suggestion works well. ...
written 6 months ago by Dineshkumar K40
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Comment: C: How to concatenate clustalw aligned fasta sequence?
... Dear @ lieven.sterck, Here, I showed an example sequence. But, in reality, I have multiple lined fasta file. All the sequences are not in single line. ...
written 6 months ago by Dineshkumar K40

Latest awards to Dineshkumar K

Epic Question 5 months ago, created a question with more than 10,000 views. For devtools Installation error in R (version 3.5.3)?
Popular Question 5 months ago, created a question with more than 1,000 views. For devtools Installation error in R (version 3.5.3)?
Popular Question 5 months ago, created a question with more than 1,000 views. For How to extract a sequence from a multi-fasta file based on its position?
Popular Question 8 months ago, created a question with more than 1,000 views. For How to count the length of fasta sequences?
Great Question 9 months ago, created a question with more than 5,000 views. For devtools Installation error in R (version 3.5.3)?
Centurion 9 months ago, created 100 posts.
Popular Question 10 months ago, created a question with more than 1,000 views. For How to count the length of fasta sequences?
Supporter 10 months ago, voted at least 25 times.
Popular Question 13 months ago, created a question with more than 1,000 views. For devtools Installation error in R (version 3.5.3)?

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