User: Dineshkumar K

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Posts by Dineshkumar K

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Comment: A: How to convert Multiple sequence alignment format (fasta, Mega etc.,) to binary
... This is what GLOOME server required, Required input: The presence and absence matrix. ("1" and "0" or missing data "-") Sorry, I might have misunderstand with presence and absence matrix and binary matrix. Could you please explain how to make MSA format to presence and absence matrix format. ...
written 9 days ago by Dineshkumar K0
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How to download all the genome sequences (including draft and complete) of a particular genus bacteria available in NCBI?
... I would like to conduct a comparative genome analysis of Xanthomonads. For which, I have been downloading all the available Xanthomonas genome (including draft and complete genome fasta format file) in NCBI of all Xanthomonas strains. As of now, I found more than 2000 genomes are available in NCBI b ...
genome assembly next-gen sequence written 10 days ago by Dineshkumar K0
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How to convert Multiple sequence alignment format (fasta, Mega etc.,) to binary MSA fasta format for gene gain and loss analysis in GLOOME server?
... I need to carryout gene gain and loss analysis of my multiple bacterial genomes in GLOOME server. For which, I need to have binary MSA fasta file and newick format tree. Therefore I need to convert my DNA or Protein MSA fasta format to GLOOME server compatible binary MSA fasta format. I do not know ...
alignment sequence written 10 days ago by Dineshkumar K0
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Segmentation fault (core dumped)
... I have been using fastANI tool to calculate Average Nucleotide Identity (ANI) value of multiple bacterial genome for the past 5 months. But recently I am facing an error like "Segmentation fault (core dumped)". The detail error report is written below as shown in linux terminal, arvind@arvind:~ ...
software error assembly alignment written 4 weeks ago by Dineshkumar K0 • updated 4 weeks ago by WouterDeCoster35k

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