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3
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3
replies
1.9k
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How to perform PPI network analysis in STRING for newly sequenced bacterial genome ?
Proteomics cytoscape network STRING
updated 7 months ago by • 0 • written 4.4 years ago by ▴ 120
0
votes
2
replies
1.2k
views
What are the offline tools available for the Eukaryotic genome annotation (including fungi, algae, animal and plant ) ?
Assembly genes genome Annotation
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 120
8
votes
9
replies
3.3k
views
How to obtain gtf file for plant genomes?
Ensembl Assembly RNA-seq Gene Genome
2.4 years ago by Kumar ▴ 120
1
vote
0
replies
3.3k
views
Comment: Comment: How to obtain gtf file for plant genomes?
2.4 years ago by Kumar ▴ 120
0
votes
0
replies
3.3k
views
Comment: Comment: How to obtain gtf file for plant genomes?
2.4 years ago by Kumar ▴ 120
0
votes
0
replies
3.3k
views
Comment: Comment: How to obtain gtf file for plant genomes?
2.4 years ago by Kumar ▴ 120
0
votes
1
reply
3.3k
views
Comment: Comment: How to obtain gtf file for plant genomes?
2.4 years ago by Kumar ▴ 120
2
votes
2
replies
3.4k
views
How to interpret two letter codes of COG category obtained from EggNOG tool?
Assembly genome proteins genes
updated 2.9 years ago by 45k • written 3.4 years ago by ▴ 120
0
votes
0
replies
662
views
How to calculate Heaps Alpha value from the roary pangenome analysis ?
NGS pan-genome genome proteins
updated 2.9 years ago by 45k • written 3.7 years ago by ▴ 120
0
votes
0
replies
814
views
Is there any way to customise the colour codes for multiple-sequence alignment (MSA)?
alignment Python genomics R phylogeny
4.2 years ago by Kumar ▴ 120
5
votes
6
replies
3.0k
views
issue with visualising cladogram/phylogenetic tree with multiple sequence alignment data in R?
r bioconductor alignment R sequencing
updated 4.4 years ago by ▴ 50 • written 6.4 years ago by ▴ 120
0
votes
1
reply
1.9k
views
error in anvi'o tool
python software error genome R gene
updated 4.4 years ago by • 0 • written 4.7 years ago by ▴ 120
0
votes
0
replies
1.2k
views
Comment: Comment: Any pipeline/tool to predict fungal virulence factors ?
4.4 years ago by Kumar ▴ 120
1
vote
2
replies
1.2k
views
Any pipeline/tool to predict fungal virulence factors ?
gene genome sequence
updated 2.4 years ago by 45k • written 4.4 years ago by ▴ 120
0
votes
0
replies
815
views
Tool/server for metal ion amino acid binding site prediction ?
proteomics database python genomics
updated 4.4 years ago by 45k • written 4.5 years ago by ▴ 120
3
votes
1
reply
1.9k
views
how to define open-pangenome?
python fasta genome dna clustering
updated 4.5 years ago by ▴ 30 • written 4.6 years ago by ▴ 120
0
votes
0
replies
828
views
Assembly pipeline/tutorial for SMRT (PacBio) sequenced bacterial genome data?
python perl pipeline genome sequence
4.4 years ago by Kumar ▴ 120
0
votes
0
replies
1.3k
views
Comment: Comment: How to download all the Zn-binding protein sequences from MetalPDB?
4.6 years ago by Kumar ▴ 120
1
vote
2
replies
1.3k
views
How to parse all the Zn-binding protein sequences from MetalPDB?
PDB database NCBI protein python
4.6 years ago by Kumar ▴ 120
5
votes
1
reply
1.1k
views
How to evaluate phylogenetic congruence between two phylogenetic tree?
snp python perl genomics phylogeny
updated 4.6 years ago by ★ 30k • written 4.6 years ago by ▴ 120
2
votes
2
replies
1.6k
views
How to predict GC-Content percentage of a fasta file?
fasta python3 perl python genome
updated 4.6 years ago by 9.3k • written 4.6 years ago by ▴ 120
17
votes
14
replies
12k
views
11 follow
how to split multi-fasta file into single fasta file named by header
genome perl python3 bash python
updated 17 months ago by 8.7k • written 4.6 years ago by ▴ 120
0
votes
2
replies
12k
views
Comment: Comment: hot to split multi-fasta file into single fasta file named by header
4.6 years ago by Kumar ▴ 120
0
votes
1
reply
1.9k
views
Comment: C: How to extract all gene nucleotide sequences separately from multiple Genbank fi
4.7 years ago by Kumar ▴ 120
0
votes
0
replies
3.1k
views
Comment: C: How to parse protein and dna sequences from prokka generated gbk or gff file bas
4.7 years ago by Kumar ▴ 120
3
votes
5
replies
3.1k
views
How to parse protein and dna sequences from prokka generated gbk or gff file based on locus_tag?
genome perl python bash R
updated 4.7 years ago by ★ 30k • written 4.7 years ago by ▴ 120
0
votes
1
reply
1.9k
views
Comment: C: How to extract all gene nucleotide sequences separately from multiple Genbank fi
4.7 years ago by Kumar ▴ 120
0
votes
1
reply
3.1k
views
Comment: C: How to parse protein sequence from prokka generated gbk or gff file based on loc
4.7 years ago by Kumar ▴ 120
0
votes
0
replies
1.2k
views
How to incorporate outgroup organism for whole genome SNP based phylogeny?
alignment genome SNP phylogeny phylogenetics
4.7 years ago by Kumar ▴ 120
0
votes
0
replies
953
views
error in Islandviewer4 API.
software-error perl python sequence
updated 2.6 years ago by 45k • written 4.8 years ago by ▴ 120
2
votes
3
replies
2.3k
views
What is the difference between Average Nucleotide Identity (ANI) and blastn analysis?
alignment blast sequence
updated 2.6 years ago by 45k • written 4.8 years ago by ▴ 120
0
votes
0
replies
2.3k
views
Comment: C: What is the difference between Average Nucleotide Identity (ANI) and blastn anal
4.8 years ago by Kumar ▴ 120
8
votes
14
replies
4.3k
views
How to remove fasta headers in a multifasta file and write file name as a fasta header?
gene sequence genome alignment next-gen
updated 2.2 years ago by 22k • written 5.1 years ago by ▴ 120
0
votes
2
replies
1.9k
views
error while executing panX script (KeyError: 'db_xref').
linux python genome biopython
updated 2.4 years ago by 45k • written 5.2 years ago by ▴ 120
0
votes
0
replies
1.6k
views
Comment: C: Anybody knows any stand alone tool/pipeline for Bacterial Gene Ontology (GO) ana
5.1 years ago by Kumar ▴ 120
2
votes
4
replies
1.6k
views
Anybody knows any stand alone tool/pipeline for Bacterial Gene Ontology (GO) analysis?
gene genome sequence
updated 2.4 years ago by 45k • written 5.1 years ago by ▴ 120
0
votes
0
replies
3.8k
views
Comment: C: How to generate reverse complement for the fasta sequences specified in the give
5.1 years ago by Kumar ▴ 120
0
votes
1
reply
3.8k
views
Comment: C: How to generate reverse complement for the fasta sequences specified in the give
5.1 years ago by Kumar ▴ 120
0
votes
0
replies
3.8k
views
Comment: C: How to generate reverse complement for the fasta sequences specified in the give
5.1 years ago by Kumar ▴ 120
0
votes
1
reply
3.8k
views
Comment: C: How to generate reverse complement for the fasta sequences specified in the give
5.1 years ago by Kumar ▴ 120
0
votes
0
replies
3.8k
views
Comment: C: How to generate reverse complement for the fasta sequences specified in the give
5.1 years ago by Kumar ▴ 120
7
votes
17
replies
3.8k
views
How to generate reverse complement for the fasta sequences specified in the given csv file?
python perl bash shell fasta
5.1 years ago by Kumar ▴ 120
0
votes
1
reply
3.8k
views
Comment: C: Reverse complement a fasta sequences based on the coordinates given in csv file?
5.1 years ago by Kumar ▴ 120
0
votes
1
reply
3.8k
views
Comment: C: Reverse complement a fasta sequences based on the coordinates given in csv file?
5.1 years ago by Kumar ▴ 120
0
votes
0
replies
3.8k
views
Comment: C: Reverse complement a fasta sequences based on the coordinates given in csv file?
5.1 years ago by Kumar ▴ 120
0
votes
1
reply
3.8k
views
Comment: C: Reverse complement a fasta sequences based on the coordinates given in csv file?
5.1 years ago by Kumar ▴ 120
0
votes
0
replies
3.8k
views
Comment: C: Reverse complement a fasta sequences based on the coordinates given in csv file?
5.1 years ago by Kumar ▴ 120
0
votes
0
replies
1.4k
views
How to upload accessory_binary_genes.fa.newick and gene_presence_absence.csv files in Phandango?
software-error python SNP roary
updated 2.4 years ago by 45k • written 5.1 years ago by ▴ 120
0
votes
0
replies
2.0k
views
Comment: C: What is the minimum percentage of identity (blastp) to predict the orthologous g
5.1 years ago by Kumar ▴ 120
1
vote
2
replies
2.0k
views
What is the minimum percentage of identity (blastp) to predict the orthologous genes in different species?
Assembly gene genome alignment
updated 2.4 years ago by 45k • written 5.1 years ago by ▴ 120
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