How to evaluate phylogenetic congruence between two phylogenetic tree?

Question

[Kumar]

I have created two phylogenetic tree based on whole genome SNPs and core genes from the same datasets. I need to evaluate phylogenetic congruence between those two phylogenetic tree. Could anyone please suggest any tool available to do the same.

Thanks in advance.

Answer 1

[Mensur Dlakic]

Ete3 toolkit can do that but it has a steep learning curve.