User: newbie
newbie • 70
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Posts by newbie
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Hi everyone,
I have 100 samples of Lung Cancer data. I did the alignment to hg38 genome and used gencode hg38 gtf for annotation. I used tools like CPC, CPAT for calculating coding potential of lncRNAs which have length > 200bp. So, with this steps I found some thousands of lncRNAs which are n ...
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... ok np. will have a look. Thanks a lot. ...
written 4 months ago by
newbie • 70
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... Ok. everything works now. But would like to know how I can bring the samples with values > 0 all together like in the plot given in the question.
In the above image you can see if it is 0 it is light white color and all the samples with values > 0 to 1 were all together for all the cell types ...
written 4 months ago by
newbie • 70
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... sorry, there is no change in the error. And in my question I also added the sample annotation now and will be using `annotation_legend_side` argument now.
The error still says same.
Error in labels_mat[, i] : subscript out of bounds
In addition: Warning message:
In matrix(1:(nrow * n ...
written 4 months ago by
newbie • 70
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... Yes, I did that and I see the same error again. ...
written 4 months ago by
newbie • 70
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... sure I will. But may I know something about the error and how to make a plot like above please ...
written 4 months ago by
newbie • 70
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... dim(mat)
67 622
class(mat)
matrix
sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/ ...
written 4 months ago by
newbie • 70
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... sorry that was a mistake. there is no `annotation_legend_side` I removed that in question. ...
written 4 months ago by
newbie • 70
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... Hi,
I have a data matrix `mat` of 622 samples as columns and cell types as rows.
sample annotation:
Samples Group
Sample1 A
Sample2 A
Sample3 A
Sample4 A
Sample5 B
Sample6 B
Sample7 B
Samp ...
written 4 months ago by
newbie • 70
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... Sure. thanq for the reply ...
written 6 months ago by
newbie • 70
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