User: newbie

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newbie70
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Posts by newbie

<prev • 35 results • page 1 of 4 • next >
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Overlapping the novel lncRNAs on mitranscriptome lncRNAs
... Hi everyone, I have 100 samples of Lung Cancer data. I did the alignment to hg38 genome and used gencode hg38 gtf for annotation. I used tools like CPC, CPAT for calculating coding potential of lncRNAs which have length > 200bp. So, with this steps I found some thousands of lncRNAs which are n ...
R mitranscriptome rna-seq gencode lncrna written 9 weeks ago by newbie70 • updated 6 weeks ago by Biostar ♦♦ 20
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Comment: C: How to make a heatmap showing signatures of scores from 0 to 1 in R?
... ok np. will have a look. Thanks a lot. ...
written 4 months ago by newbie70
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Comment: C: How to make a heatmap showing signatures of scores from 0 to 1 in R?
... Ok. everything works now. But would like to know how I can bring the samples with values > 0 all together like in the plot given in the question. In the above image you can see if it is 0 it is light white color and all the samples with values > 0 to 1 were all together for all the cell types ...
written 4 months ago by newbie70
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Comment: C: How to make a heatmap showing signatures of scores from 0 to 1 in R?
... sorry, there is no change in the error. And in my question I also added the sample annotation now and will be using `annotation_legend_side` argument now. The error still says same. Error in labels_mat[, i] : subscript out of bounds In addition: Warning message: In matrix(1:(nrow * n ...
written 4 months ago by newbie70
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Comment: C: How to make a heatmap showing signatures of scores from 0 to 1 in R?
... Yes, I did that and I see the same error again. ...
written 4 months ago by newbie70
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Comment: C: How to make a heatmap showing signatures of scores from 0 to 1 in R?
... sure I will. But may I know something about the error and how to make a plot like above please ...
written 4 months ago by newbie70
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Comment: C: How to make a heatmap showing signatures of scores from 0 to 1 in R?
... dim(mat) 67 622 class(mat) matrix sessionInfo() R version 3.6.0 (2019-04-26) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS High Sierra 10.13.6 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/ ...
written 4 months ago by newbie70
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Comment: C: How to make a heatmap showing signatures of scores from 0 to 1 in R?
... sorry that was a mistake. there is no `annotation_legend_side` I removed that in question. ...
written 4 months ago by newbie70
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How to make a heatmap showing signatures of scores from 0 to 1 in R?
... Hi, I have a data matrix `mat` of 622 samples as columns and cell types as rows. sample annotation: Samples Group Sample1 A Sample2 A Sample3 A Sample4 A Sample5 B Sample6 B Sample7 B Samp ...
R heatmap signatures rna-seq complexheatmap written 4 months ago by newbie70
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Comment: C: soft threshold for co-expression analysis using WGCNA based on scale independenc
... Sure. thanq for the reply ...
written 6 months ago by newbie70

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