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1.3k
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How to get information about antisense/sense lncRNAs?
RNA-Seq lncrna gencode
updated 4.7 years ago by ★ 19k • written 4.7 years ago by ▴ 140
2
votes
7
replies
3.9k
views
How to get the phastcons score for protein coding genes and lncRNAs?
RNA-Seq phastcons genome conservation
updated 4.9 years ago by 20 • written 5.6 years ago by ▴ 140
0
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1
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2.1k
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Comment: C: How to get transcript ID and tpm from the gtf files of ballgown outputs?
4.9 years ago by newbie ▴ 140
0
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3
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2.1k
views
How to get transcript ID and tpm from the gtf files of ballgown outputs?
RNA-Seq ballgown hisat2 gtf awk
updated 4.9 years ago by 45k • written 4.9 years ago by ▴ 140
3
votes
5
replies
3.0k
views
How to get the output on multiple files into one file in sbatch script?
RNA-Seq strand rseqc sbtach slurm
updated 5.0 years ago by 20 • written 5.1 years ago by ▴ 140
0
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1
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4.2k
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Comment: C: Kmeans in R for clustering on significant gene list by sample
5.0 years ago by newbie ▴ 140
1
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1
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1.8k
views
Problem with bedtools intersect with two gtfs
RNA-Seq gtf bedtools intersect
5.0 years ago by newbie ▴ 140
8
votes
11
replies
5.3k
views
Differential analysis show different results with edgeR and in box plot with t-test
RNA-Seq R differential analysis edger boxplot
updated 5.0 years ago by • 0 • written 6.6 years ago by ▴ 140
0
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0
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2.7k
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Comment: C: Is it good to merge transcripts tpm to gene which is of different gene type?
5.0 years ago by newbie ▴ 140
6
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5
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2.7k
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Is it good to merge transcripts tpm to gene which is of different gene type?
RNA-Seq kallisto tpm
updated 5.0 years ago by • 0 • written 5.0 years ago by ▴ 140
0
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0
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3.6k
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Comment: C: Why counts to tpm gives different values compared to tpm from kallisto?
5.0 years ago by newbie ▴ 140
0
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1
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3.6k
views
Comment: C: Why counts to tpm gives different values compared to tpm from kallisto?
5.0 years ago by newbie ▴ 140
0
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4
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3.6k
views
Why counts to tpm gives different values compared to tpm from kallisto?
RNA-Seq tpm kallisto rawcounts featureCounts
5.0 years ago by newbie ▴ 140
0
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1
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3.1k
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Comment: C: Interpretation of two PCA plots
5.0 years ago by newbie ▴ 140
0
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4
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3.1k
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Interpretation of two PCA plots
RNA-Seq pca clustering
updated 5.0 years ago by 15k • written 5.0 years ago by ▴ 140
0
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0
replies
3.0k
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Comment: C: How to get the output on multiple files into one file in sbatch script?
5.1 years ago by newbie ▴ 140
0
votes
1
reply
3.0k
views
Comment: C: How to get the output on multiple files into one file in sbatch script?
5.1 years ago by newbie ▴ 140
0
votes
1
reply
3.9k
views
Comment: C: Why there are low assigned reads in featureCounts output and different outputs f
5.1 years ago by newbie ▴ 140
0
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1
reply
3.9k
views
Comment: C: Why there are low assigned reads in featureCounts output and different outputs f
5.1 years ago by newbie ▴ 140
0
votes
1
reply
3.9k
views
Comment: C: Why there are low assigned reads in featureCounts output and different outputs f
5.1 years ago by newbie ▴ 140
0
votes
1
reply
3.9k
views
Comment: C: Why there are low assigned reads in featureCounts output and different outputs f
5.1 years ago by newbie ▴ 140
2
votes
9
replies
3.9k
views
Why there are low assigned reads in featureCounts output and different outputs for quality checks?
RNA-Seq featureCounts alignment qualimap reads
updated 5.1 years ago by 13k • written 5.1 years ago by ▴ 140
0
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1
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2.5k
views
Comment: C: Warnings in the Hisat2 alignment output files
5.2 years ago by newbie ▴ 140
0
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0
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2.5k
views
Comment: C: Warnings in the Hisat2 alignment output files
5.2 years ago by newbie ▴ 140
1
vote
5
replies
2.5k
views
Warnings in the Hisat2 alignment output files
RNA-Seq hisat2 cutadapt alignment
updated 5.2 years ago by 15k • written 5.2 years ago by ▴ 140
0
votes
2
replies
2.6k
views
Why sequence length disturbution failed after adapter trimming: fastqc?
RNA-Seq fastqc qualitycontrol adaptertrimming
updated 5.2 years ago by ▴ 390 • written 5.2 years ago by ▴ 140
1
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1
reply
2.0k
views
Denovo assembly or Reference based assembly for identifying novel lncRNAs
RNA-Seq stringtie hisat2 denovoassembly lncrna
5.2 years ago by newbie ▴ 140
0
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0
replies
1.2k
views
Comment: C: correlation between expression and tumor size
5.2 years ago by newbie ▴ 140
3
votes
3
replies
1.2k
views
correlation between expression and tumor size
R expression tumorsize correlation
updated 5.2 years ago by 89k • written 5.2 years ago by ▴ 140
0
votes
1
reply
1.8k
views
How to check whether mutation in a gene activating or inactivating other genes?
mutation maftools wgs activation
updated 5.3 years ago by 13k • written 5.3 years ago by ▴ 140
0
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0
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3.8k
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Comment: C: Error with Rseqc infer_experiment - unknown datatype
5.3 years ago by newbie ▴ 140
0
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1
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3.8k
views
Comment: C: Error with Rseqc infer_experiment - unknown datatype
updated 5.3 years ago by 154k • written 5.3 years ago by ▴ 140
0
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1
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3.8k
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Comment: C: Error with Rseqc infer_experiment - unknown datatype
5.3 years ago by newbie ▴ 140
0
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0
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3.8k
views
Comment: C: Error with Rseqc infer_experiment - unknown datatype
5.3 years ago by newbie ▴ 140
0
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0
replies
3.8k
views
Answer: C: Error with Rseqc infer_experiment - unknown datatype
5.3 years ago by newbie ▴ 140
0
votes
0
replies
3.8k
views
Comment: C: Error with Rseqc infer_experiment - unknown datatype
5.3 years ago by newbie ▴ 140
0
votes
9
replies
3.8k
views
Error with Rseqc infer_experiment - unknown datatype
RNA-Seq rseqc inferexperiment gtf2bed
5.3 years ago by newbie ▴ 140
0
votes
1
reply
2.0k
views
Comment: C: How to look for a specific nucleotides of lncRNA sequence in TCGA data?
5.3 years ago by newbie ▴ 140
0
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1
reply
2.0k
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Comment: C: How to look for a specific nucleotides of lncRNA sequence in TCGA data?
5.3 years ago by newbie ▴ 140
0
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1
reply
2.0k
views
Comment: C: How to look for a specific nucleotides of lncRNA sequence in TCGA data?
5.3 years ago by newbie ▴ 140
0
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1
reply
2.0k
views
Comment: C: How to look for a specific nucleotides of lncRNA sequence in TCGA data?
5.3 years ago by newbie ▴ 140
4
votes
10
replies
2.0k
views
How to look for a specific nucleotides of lncRNA sequence in TCGA data?
RNA-Seq sequence alignment blat tcga
updated 5.3 years ago by 89k • written 5.3 years ago by ▴ 140
0
votes
1
reply
1.7k
views
How to make a Pathway enrichment Heatmap with padjusted values?
RNA-Seq r pathways heatmap
updated 5.3 years ago by 13k • written 5.3 years ago by ▴ 140
0
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0
replies
1.6k
views
Comment: C: Problem in subsetting a gtf based on ids in another file
5.3 years ago by newbie ▴ 140
0
votes
3
replies
1.6k
views
Problem in subsetting a gtf based on ids in another file
gtf slurm grep shell bash
5.3 years ago by newbie ▴ 140
0
votes
1
reply
1.9k
views
Comment: C: Questions about detecting module related to which Group using WGCNA?
5.4 years ago by newbie ▴ 140
0
votes
3
replies
1.9k
views
Questions about detecting module related to which Group using WGCNA?
RNA-Seq R wgcna coexpression trait
updated 5.4 years ago by 89k • written 5.4 years ago by ▴ 140
0
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1
reply
1.8k
views
Comment: C: How to detect cis and trans protein coding genes of interested lncRNAs?
5.4 years ago by newbie ▴ 140
0
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1
reply
1.8k
views
Comment: C: How to detect cis and trans protein coding genes of interested lncRNAs?
5.4 years ago by newbie ▴ 140
2
votes
5
replies
1.8k
views
How to detect cis and trans protein coding genes of interested lncRNAs?
RNA-Seq ChIP-Seq lncrna wgcna
updated 5.4 years ago by 22k • written 5.4 years ago by ▴ 140
111 results • Page 1 of 3
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