User: 9521ljh

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9521ljh10
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Posts by 9521ljh

<prev • 40 results • page 1 of 4 • next >
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Does TCGA rna-seq data include fusion gene expression?
... i find some significant Chimeric(fusion gene) in DNA sequence. And i want to compare RNA- expression level. i read TCGA RNA-seq alignment Workflow here: https://docs.gdc.cancer.gov/Data/Bioinformatics_Pipelines/Expression_mRNA_Pipeline/ they are separating the file according to some criterion (e ...
sequence next-gen rna-seq sequencing written 8 days ago by 9521ljh10
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Comment: C: where to get Whole Genome Sequencing of Cell line?
... i can find WES data, but not Whole Genome sequencing :( ...
written 15 days ago by 9521ljh10
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Comment: C: where to get Whole Genome Sequencing of Cell line?
... sincerely, thank you ...
written 15 days ago by 9521ljh10
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Comment: C: where to get Whole Genome Sequencing of Cell line?
... sincerely, thank you ...
written 15 days ago by 9521ljh10
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where to get Whole Genome Sequencing of Cell line?
... i want to get a data Whole Genome Sequencing, Whole Transcription Sequencing of embryonal rhabdomyosarcoma cell line. where to get these data? ...
genome sequence sequencing written 15 days ago by 9521ljh10 • updated 15 days ago by Carambakaracho1.6k
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question about translocation of SV caller output
... if the SV caller give that: chr:3 pos: 333223 chr:5 pos: 444332 i understand that breakpoint was in that postion. however, Translocation need two pairs of breakpoints. why there's no other breakpoints? why only one of breakspoints is represented? ...
genome sequencing written 4 weeks ago by 9521ljh10
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why telomere position do not have any reference ?
... In IGV, the end of chromosome is NNNNNNNNNNNNNNNNN no any sequence in telomere position. why it doesnt have? is it technology limit? ...
next-gen alignment sequencing written 5 weeks ago by 9521ljh10
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What is best tool for Cohort data of DNA?
... i have a hundred of DNA sequence samples of cancer patient. The data come from NGS. Thus i am going to analysis it about Germline, Somatic, Mutation, Copy Number, Structural Variant ..and so on.. Please recommend the famous tools ! ...
gene next-gen sequence sequencing written 6 weeks ago by 9521ljh10 • updated 6 weeks ago by manuel.belmadani1.1k
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Answer: C: Why samtools depth error
... sorry, i solve this problem... actually test.bam file is another directory. Thus i copy it in same directory ( bed, bam, bai) ...
written 8 weeks ago by 9521ljh10
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Comment: C: Why samtools depth error
... This also output empty ...
written 8 weeks ago by 9521ljh10

Latest awards to 9521ljh

Scholar 8 weeks ago, created an answer that has been accepted. For C: Why samtools depth error
Supporter 4 months ago, voted at least 25 times.

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