User: 9521ljh

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9521ljh10
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1 year ago
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Posts by 9521ljh

<prev • 62 results • page 1 of 7 • next >
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Comment: C: Comparing RNA expression between different tissue type, but same Cancer.
... Sincerely really thank you! ...
written 9 days ago by 9521ljh10
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Comparing RNA expression between different tissue type, but same Cancer.
... i have 40 SARCOMA data. and there are many groups of tissue. if i use RNA expression normalization method, is it okay to compare? More specific, if i have 12 bone tissue sarcoma and 28 Uterus tissue type. using these 40 sample, the edgeR results in MDM4 gene is differentially expression in tumor ...
rna-seq written 10 days ago by 9521ljh10 • updated 9 days ago by i.sudbery7.0k
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GeneHancer Database download link
... I can not find where to download GeneHancer Database. the alternative download is below link. [oncobase link][1] [1]: http://159.226.67.237/sun/oncobase/welcome/download.html This link is provided by oncobase(another Database) , not GeneHancer. However, i want to download directly to Geneh ...
next-gen sequencing written 13 days ago by 9521ljh10 • updated 10 days ago by Biostar ♦♦ 20
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whole genome sequencing analysis for one sample
... is there any paper for one sample analysis? i want to reference. But i can't find research article that analyze only one sample. ...
genome rna-seq written 24 days ago by 9521ljh10 • updated 24 days ago by Fatima350
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Circos plot tool
... i am looking for R package or tool for plotting Circos. http://circos.ca/images/ This tool is most popular. But it is too hard for me to plot genomic rearrangment and can't find the manual for plot Copy number or genomic rearrangement. please recommend the Tools for plot Circos easily ...
R next-gen sequence written 5 weeks ago by 9521ljh10 • updated 28 days ago by Biostar ♦♦ 20
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RNA-seq batch effect remove
... i have TCGA RNA seq dataset(sample number: 11) and my own dataset(sample number : 11) i want to compare TCGA and my own dataset expression level. However, i find that my own datasets have lot of read counts(output from RSEM) overall. Thus, i feel need to do remove batch effect within TCGA datas ...
rna-seq sequencing written 5 weeks ago by 9521ljh10 • updated 21 days ago by Biostar ♦♦ 20
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DAVID multiple input
... i have lots of gene list files. (40 files) Uploading one by one takes a long time. Thus, how can i upload 40 files ??????? ...
gene next-gen sequencing written 7 weeks ago by 9521ljh10
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LOH wild type?
... if loss of heterozygosity event happened, it is important if wild type is lost or not. But how to know the wild type of particular gene???? and how to know the gene which lost wild type will function well or not.?/??? ...
genome snp sequencing written 8 weeks ago by 9521ljh10
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Predict function by Mutation?
... i have gene list which have nonsynonym mutation variant by DNA sequencing But i want to further know this mutation cause functional abnormal. Is there some tools for predicting function by mutation??? ...
gene next-gen snp sequencing written 8 weeks ago by 9521ljh10 • updated 8 weeks ago by Kevin Blighe55k
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Fusion orientation make sense or not
... I use TCGA data and run Structural Variant calling tools(e.g. Delly,Manta...) Then i annotate the SV breakpoint and pick up fusion gene which met different genes. ex) - SV calling output and pick up meeting different genes - GeneA--GeneA, 5to5 - GeneA--GeneC, 3to5 (pick up) ...
gene sequence next-gen sequencing written 11 weeks ago by 9521ljh10 • updated 10 weeks ago by hellosearchorg0

Latest awards to 9521ljh

Voter 5 months ago, voted more than 100 times.
Scholar 7 months ago, created an answer that has been accepted. For C: Why samtools depth error
Supporter 9 months ago, voted at least 25 times.

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