User: 9521ljh

gravatar for 9521ljh
9521ljh20
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1 year, 4 months ago
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Posts by 9521ljh

<prev • 68 results • page 1 of 7 • next >
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Annovar annotation with specific ENST region ( retain_intron exon)
... ![ENST00000463601][1] [picture][2] i find retain_intron exon region transcript ( ENST0000463601 ) And , i want to annotation that region with Annovar or snpeff for searching protein changing on that region. so i use Ensembl reference. However, Annovar annotation give me that region is intron r ...
next-gen rna-seq written 7 weeks ago by 9521ljh20
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Comment: C: Methylation normalization between samples from different platform
... sincerely really thank you!!! ...
written 11 weeks ago by 9521ljh20
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Methylation normalization between samples from different platform
... hello i have SARCOMA methylation data from BeadChip platform. and i found normal methylation data samples in TCGA from Illumina Human Methylation 450. in minfi package, i try to read data to normalization. However, the error occurs because of different data format. in this case , how can i norm ...
gene written 11 weeks ago by 9521ljh20 • updated 11 weeks ago by ATpoint36k
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Methylation analysis if no normal control
... I have methylation data, beta value of cancer patient. but only tumor sample i have, no control. There is no normal control in TCGA portal data for reference. And i also have RNA expression value. i want to find cancer driver gene of these samples.....but i'm stuck in now.. There's no any paper ...
rna-seq written 3 months ago by 9521ljh20
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Cell line RNA differentially expression gene
... i want to find the differential expressed gene of "RD" Cell line. ex) MYOD1 is highly expressed in RD. this is known at some paper. However, searching paper for find which gene is highly,lowly expressed is too exhausting. Thus , i want to find some database for reference RD cell line expression ...
rna-seq written 3 months ago by 9521ljh20 • updated 3 months ago by Kevin Blighe61k
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RNA log2 fold change in FPKM
... Hi i want to compare between Tumor and normal expression level. i have FPKM expression level. and i am gonna do Log2(Tumor-FPKM/normal-FPKM). is it reasonable to calculator? ...
rna-seq written 3 months ago by 9521ljh20
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How to do if no normal control for RNA
... I have 10 patient Tumor RNA sequence. i have somatic mutation (DNA) list. Then i want to survey whether somatic mutation effect to RNA expression. However, there is no normal control. is there any way to analyze? additionally, i don't have control Methylation(idat)... i am losing way to ana ...
next-gen rna-seq written 4 months ago by 9521ljh20 • updated 4 months ago by i.sudbery8.2k
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Comment: C: Comparing RNA expression between different tissue type, but same Cancer.
... Sincerely really thank you! ...
written 4 months ago by 9521ljh20
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Comparing RNA expression between different tissue type, but same Cancer.
... i have 40 SARCOMA data. and there are many groups of tissue. if i use RNA expression normalization method, is it okay to compare? More specific, if i have 12 bone tissue sarcoma and 28 Uterus tissue type. using these 40 sample, the edgeR results in MDM4 gene is differentially expression in tumor ...
rna-seq written 4 months ago by 9521ljh20 • updated 4 months ago by i.sudbery8.2k
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GeneHancer Database download link
... I can not find where to download GeneHancer Database. the alternative download is below link. [oncobase link][1] [1]: http://159.226.67.237/sun/oncobase/welcome/download.html This link is provided by oncobase(another Database) , not GeneHancer. However, i want to download directly to Geneh ...
next-gen sequencing written 4 months ago by 9521ljh20 • updated 4 months ago by Biostar ♦♦ 20

Latest awards to 9521ljh

Popular Question 3 months ago, created a question with more than 1,000 views. For very confused with GC bias
Voter 9 months ago, voted more than 100 times.
Scholar 11 months ago, created an answer that has been accepted. For C: Why samtools depth error
Supporter 14 months ago, voted at least 25 times.

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