User: 9521ljh

gravatar for 9521ljh
9521ljh20
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1 day, 21 hours ago
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1 year, 9 months ago
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Posts by 9521ljh

<prev • 72 results • page 1 of 8 • next >
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why snp class classified into 6 class?
... Using maftools, plotmafSummary command. the plot only show 6 class SNP( T>G, T>A, T>C, C>T, C>A, C>G). why it is not show G > A or A>G , etcs....? ...
snp written 20 days ago by 9521ljh20
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Comment: C: allele specific mutation ?
... sorry, NGS data Whole genome sequencing ...
written 12 weeks ago by 9521ljh20
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allele specific mutation ?
... i want to know allele of mutation. for example, i already know there were germline and somatic mutation on chr10. however, i want to know whether they are same allele position or not. which tools is best? i cant find ... ...
next-gen sequencing written 12 weeks ago by 9521ljh20
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Variant allele frequency with copy number
... the variant allele frequency(VAF) related to time-series, e.g. higher VAF related to early mutation, lower VAF related late occurred mutation. However, if the copy number amplification with late occurred mutation, this VAF might high if mutation allele- amplified or low if wild-type allele amplifi ...
snp sequencing written 3 months ago by 9521ljh20
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Annovar annotation with specific ENST region ( retain_intron exon)
... ![ENST00000463601][1] [picture][2] i find retain_intron exon region transcript ( ENST0000463601 ) And , i want to annotation that region with Annovar or snpeff for searching protein changing on that region. so i use Ensembl reference. However, Annovar annotation give me that region is intron r ...
next-gen rna-seq written 6 months ago by 9521ljh20
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Comment: C: Methylation normalization between samples from different platform
... sincerely really thank you!!! ...
written 7 months ago by 9521ljh20
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Methylation normalization between samples from different platform
... hello i have SARCOMA methylation data from BeadChip platform. and i found normal methylation data samples in TCGA from Illumina Human Methylation 450. in minfi package, i try to read data to normalization. However, the error occurs because of different data format. in this case , how can i norm ...
gene written 7 months ago by 9521ljh20 • updated 7 months ago by ATpoint41k
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Methylation analysis if no normal control
... I have methylation data, beta value of cancer patient. but only tumor sample i have, no control. There is no normal control in TCGA portal data for reference. And i also have RNA expression value. i want to find cancer driver gene of these samples.....but i'm stuck in now.. There's no any paper ...
rna-seq written 7 months ago by 9521ljh20
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Cell line RNA differentially expression gene
... i want to find the differential expressed gene of "RD" Cell line. ex) MYOD1 is highly expressed in RD. this is known at some paper. However, searching paper for find which gene is highly,lowly expressed is too exhausting. Thus , i want to find some database for reference RD cell line expression ...
rna-seq written 7 months ago by 9521ljh20 • updated 7 months ago by Kevin Blighe67k
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RNA log2 fold change in FPKM
... Hi i want to compare between Tumor and normal expression level. i have FPKM expression level. and i am gonna do Log2(Tumor-FPKM/normal-FPKM). is it reasonable to calculator? ...
rna-seq written 7 months ago by 9521ljh20

Latest awards to 9521ljh

Popular Question 7 months ago, created a question with more than 1,000 views. For very confused with GC bias
Voter 14 months ago, voted more than 100 times.
Scholar 16 months ago, created an answer that has been accepted. For C: Why samtools depth error
Supporter 18 months ago, voted at least 25 times.

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