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3
votes
1
reply
550
views
is there any other value for evaluating Sequence Mapping??
sequencing alignment assembly Assembly
updated 19 months ago by 20 • written 3.2 years ago by ▴ 50
0
votes
1
reply
352
views
why snp class classified into 6 class?
snp
20 months ago by 9521ljh ▴ 50
0
votes
0
replies
282
views
Comment: C: allele specific mutation ?
22 months ago by 9521ljh ▴ 50
0
votes
2
replies
282
views
allele specific mutation ?
sequencing next-gen
22 months ago by 9521ljh ▴ 50
0
votes
1
reply
517
views
Variant allele frequency with copy number
sequencing SNP
22 months ago by 9521ljh ▴ 50
0
votes
0
replies
333
views
Annovar annotation with specific ENST region ( retain_intron exon)
RNA-Seq next-gen
2.1 years ago by 9521ljh ▴ 50
0
votes
0
replies
406
views
Comment: C: Methylation normalization between samples from different platform
2.2 years ago by 9521ljh ▴ 50
2
votes
2
replies
406
views
Methylation normalization between samples from different platform
gene
updated 2.2 years ago by 62k • written 2.2 years ago by ▴ 50
4
votes
1
reply
432
views
Methylation analysis if no normal control
rna-seq
2.2 years ago by 9521ljh ▴ 50
0
votes
1
reply
454
views
Cell line RNA differentially expression gene
RNA-Seq
updated 2.2 years ago by 81k • written 2.2 years ago by ▴ 50
0
votes
0
replies
779
views
RNA log2 fold change in FPKM
RNA-Seq
2.2 years ago by 9521ljh ▴ 50
0
votes
5
replies
452
views
How to do if no normal control for RNA
next-gen RNA-Seq
updated 2.3 years ago by 14k • written 2.3 years ago by ▴ 50
0
votes
0
replies
584
views
Comment: C: Comparing RNA expression between different tissue type, but same Cancer.
2.4 years ago by 9521ljh ▴ 50
0
votes
2
replies
584
views
Comparing RNA expression between different tissue type, but same Cancer.
RNA-Seq
updated 2.4 years ago by 14k • written 2.4 years ago by ▴ 50
3
votes
1
reply
1.7k
views
GeneHancer Database download link
sequencing next-gen
updated 2.4 years ago by 20 • written 2.4 years ago by ▴ 50
0
votes
2
replies
805
views
RNA-seq batch effect remove
RNA-Seq sequencing
updated 2.4 years ago by 20 • written 2.4 years ago by ▴ 50
0
votes
1
reply
434
views
whole genome sequencing analysis for one sample
genome rna-seq
updated 2.4 years ago by ▴ 970 • written 2.4 years ago by ▴ 50
4
votes
3
replies
852
views
Circos plot tool
next-gen sequence R
updated 2.4 years ago by 20 • written 2.4 years ago by ▴ 50
0
votes
1
reply
312
views
DAVID multiple input
gene next-gen sequencing
2.5 years ago by 9521ljh ▴ 50
2
votes
3
replies
511
views
Predict function by Mutation?
SNP gene sequencing next-gen
updated 2.5 years ago by 81k • written 2.5 years ago by ▴ 50
0
votes
2
replies
673
views
Fusion orientation make sense or not
sequencing sequence next-gen gene
updated 2.5 years ago by • 0 • written 2.6 years ago by ▴ 50
3
votes
2
replies
837
views
mRNA, ceRNA, miRNA network database
rna-seq R next-gen
updated 2.6 years ago by 14k • written 2.6 years ago by ▴ 50
6
votes
4
replies
443
views
is there any database that show RNA false positive?
RNA-Seq next-gen sequencing
updated 2.6 years ago by ★ 3.9k • written 2.6 years ago by ▴ 50
0
votes
2
replies
1.4k
views
extract discordant,split reads from BAM file
next-gen sequencing sequence
updated 2.7 years ago by 34k • written 2.7 years ago by ▴ 50
4
votes
1
reply
438
views
How to know does DNA variant sequencing (eg. somatic variant) affect to Protein structure?
RNA-Seq rna-seq sequence sequencing next-gen
updated 2.7 years ago by ▴ 330 • written 2.7 years ago by ▴ 50
1
vote
1
reply
494
views
why telomere position do not have any reference ?
next-gen sequencing alignment
updated 2.7 years ago by 20 • written 2.9 years ago by ▴ 50
4
votes
1
reply
501
views
RNA and DNA variant difference
next-gen rna-seq genome sequencing
2.7 years ago by 9521ljh ▴ 50
0
votes
0
replies
1.3k
views
Comment: C: How to check exon count of gene?
2.7 years ago by 9521ljh ▴ 50
0
votes
1
reply
1.3k
views
Comment: C: How to check exon count of gene?
2.7 years ago by 9521ljh ▴ 50
0
votes
3
replies
1.3k
views
How to check exon count of gene?
sequence sequencing next-gen
updated 2.7 years ago by ▴ 170 • written 2.7 years ago by ▴ 50
0
votes
1
reply
690
views
Does TCGA rna-seq data include fusion gene expression?
sequencing RNA-Seq sequence next-gen
updated 2.8 years ago by 81k • written 2.8 years ago by ▴ 50
9
votes
4
replies
1.4k
views
hg19 exon, intron, UTR region
sequencing next-gen
updated 2.8 years ago by 146k • written 2.8 years ago by ▴ 50
5
votes
2
replies
742
views
gene transcription direction
sequencing genome gene
updated 2.8 years ago by 36k • written 2.8 years ago by ▴ 50
3
votes
1
reply
600
views
where to get Gene strand file?
sequence gene
updated 2.8 years ago by 62k • written 2.8 years ago by ▴ 50
0
votes
0
replies
742
views
Comment: C: gene transcription direction
2.8 years ago by 9521ljh ▴ 50
0
votes
0
replies
1.4k
views
Comment: C: where to get Whole Genome Sequencing of Cell line?
2.8 years ago by 9521ljh ▴ 50
0
votes
0
replies
1.4k
views
Comment: C: where to get Whole Genome Sequencing of Cell line?
2.8 years ago by 9521ljh ▴ 50
0
votes
0
replies
1.4k
views
Comment: C: where to get Whole Genome Sequencing of Cell line?
2.8 years ago by 9521ljh ▴ 50
5
votes
5
replies
1.4k
views
where to get Whole Genome Sequencing of Cell line?
genome sequencing sequence
updated 2.8 years ago by ★ 3.0k • written 2.8 years ago by ▴ 50
1
vote
1
reply
555
views
question about translocation of SV caller output
sequencing genome
2.9 years ago by 9521ljh ▴ 50
3
votes
2
replies
519
views
What is best tool for Cohort data of DNA?
next-gen sequencing sequence gene
updated 2.9 years ago by ★ 1.3k • written 2.9 years ago by ▴ 50
0
votes
0
replies
685
views
Answer: C: Why samtools depth error
2.9 years ago by 9521ljh ▴ 50
0
votes
0
replies
685
views
Comment: C: Why samtools depth error
2.9 years ago by 9521ljh ▴ 50
0
votes
1
reply
685
views
Comment: C: Why samtools depth error
2.9 years ago by 9521ljh ▴ 50
0
votes
4
replies
685
views
Why samtools depth error
sequence gene sequencing
2.9 years ago by 9521ljh ▴ 50
1
vote
1
reply
818
views
Absolute segmentation file result
sequencing alignment genome
updated 3.0 years ago by 5.2k • written 3.0 years ago by ▴ 50
0
votes
2
replies
980
views
Comment: C: extract region from the bam file
3.0 years ago by 9521ljh ▴ 50
0
votes
5
replies
980
views
extract region from the bam file
assembly sequencing genome
3.0 years ago by 9521ljh ▴ 50
2
votes
2
replies
494
views
How to mapping DNA read pairs to reference according to particular gene ?
genome next-gen sequencing gene assembly
3.0 years ago by 9521ljh ▴ 50
0
votes
1
reply
445
views
Varscan parameters(options) value
genome sequencing sequence snp
updated 3.1 years ago by 20 • written 3.2 years ago by ▴ 50
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