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1
vote
2
replies
752
views
question about translocation of SV caller output
sequencing genome
updated 3 months ago by ▴ 90 • written 3.3 years ago by ▴ 50
3
votes
1
reply
599
views
is there any other value for evaluating Sequence Mapping??
sequencing alignment assembly Assembly
updated 2.0 years ago by 20 • written 3.6 years ago by ▴ 50
0
votes
1
reply
413
views
why snp class classified into 6 class?
snp
2.1 years ago by 9521ljh ▴ 50
0
votes
0
replies
319
views
Comment: C: allele specific mutation ?
2.2 years ago by 9521ljh ▴ 50
0
votes
2
replies
319
views
allele specific mutation ?
sequencing next-gen
2.2 years ago by 9521ljh ▴ 50
0
votes
1
reply
586
views
Variant allele frequency with copy number
sequencing SNP
2.3 years ago by 9521ljh ▴ 50
0
votes
0
replies
377
views
Annovar annotation with specific ENST region ( retain_intron exon)
RNA-Seq next-gen
2.5 years ago by 9521ljh ▴ 50
0
votes
0
replies
450
views
Comment: C: Methylation normalization between samples from different platform
2.6 years ago by 9521ljh ▴ 50
2
votes
2
replies
450
views
Methylation normalization between samples from different platform
gene
updated 2.6 years ago by 66k • written 2.6 years ago by ▴ 50
4
votes
1
reply
475
views
Methylation analysis if no normal control
rna-seq
2.6 years ago by 9521ljh ▴ 50
0
votes
1
reply
516
views
Cell line RNA differentially expression gene
RNA-Seq
updated 2.6 years ago by 83k • written 2.6 years ago by ▴ 50
0
votes
0
replies
853
views
RNA log2 fold change in FPKM
RNA-Seq
2.6 years ago by 9521ljh ▴ 50
0
votes
5
replies
500
views
How to do if no normal control for RNA
next-gen RNA-Seq
updated 2.7 years ago by 15k • written 2.7 years ago by ▴ 50
0
votes
0
replies
648
views
Comment: C: Comparing RNA expression between different tissue type, but same Cancer.
2.8 years ago by 9521ljh ▴ 50
0
votes
2
replies
648
views
Comparing RNA expression between different tissue type, but same Cancer.
RNA-Seq
updated 2.8 years ago by 15k • written 2.8 years ago by ▴ 50
3
votes
1
reply
1.9k
views
GeneHancer Database download link
sequencing next-gen
updated 2.8 years ago by 20 • written 2.8 years ago by ▴ 50
0
votes
2
replies
912
views
RNA-seq batch effect remove
RNA-Seq sequencing
updated 2.8 years ago by 20 • written 2.9 years ago by ▴ 50
0
votes
1
reply
495
views
whole genome sequencing analysis for one sample
genome rna-seq
updated 2.8 years ago by ▴ 1000 • written 2.8 years ago by ▴ 50
4
votes
3
replies
957
views
Circos plot tool
next-gen sequence R
updated 2.8 years ago by 20 • written 2.8 years ago by ▴ 50
0
votes
1
reply
348
views
DAVID multiple input
gene next-gen sequencing
2.9 years ago by 9521ljh ▴ 50
2
votes
3
replies
562
views
Predict function by Mutation?
SNP gene sequencing next-gen
updated 2.9 years ago by 83k • written 2.9 years ago by ▴ 50
0
votes
2
replies
756
views
Fusion orientation make sense or not
sequencing sequence next-gen gene
updated 3.0 years ago by • 0 • written 3.0 years ago by ▴ 50
3
votes
2
replies
916
views
mRNA, ceRNA, miRNA network database
rna-seq R next-gen
updated 3.0 years ago by 15k • written 3.0 years ago by ▴ 50
6
votes
4
replies
504
views
is there any database that show RNA false positive?
RNA-Seq next-gen sequencing
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by ▴ 50
0
votes
2
replies
1.5k
views
extract discordant,split reads from BAM file
next-gen sequencing sequence
updated 3.1 years ago by 34k • written 3.1 years ago by ▴ 50
4
votes
1
reply
486
views
How to know does DNA variant sequencing (eg. somatic variant) affect to Protein structure?
RNA-Seq rna-seq sequence sequencing next-gen
updated 3.1 years ago by ▴ 360 • written 3.1 years ago by ▴ 50
1
vote
1
reply
538
views
why telomere position do not have any reference ?
next-gen sequencing alignment
updated 3.1 years ago by 20 • written 3.3 years ago by ▴ 50
4
votes
1
reply
539
views
RNA and DNA variant difference
next-gen rna-seq genome sequencing
3.1 years ago by 9521ljh ▴ 50
0
votes
0
replies
1.3k
views
Comment: C: How to check exon count of gene?
3.2 years ago by 9521ljh ▴ 50
0
votes
1
reply
1.3k
views
Comment: C: How to check exon count of gene?
3.2 years ago by 9521ljh ▴ 50
0
votes
3
replies
1.3k
views
How to check exon count of gene?
sequence sequencing next-gen
updated 3.2 years ago by ▴ 170 • written 3.2 years ago by ▴ 50
0
votes
1
reply
763
views
Does TCGA rna-seq data include fusion gene expression?
sequencing RNA-Seq sequence next-gen
updated 3.2 years ago by 83k • written 3.2 years ago by ▴ 50
9
votes
4
replies
1.6k
views
hg19 exon, intron, UTR region
sequencing next-gen
updated 3.2 years ago by 150k • written 3.2 years ago by ▴ 50
5
votes
2
replies
822
views
gene transcription direction
sequencing genome gene
updated 3.2 years ago by 37k • written 3.2 years ago by ▴ 50
3
votes
1
reply
649
views
where to get Gene strand file?
sequence gene
updated 3.2 years ago by 66k • written 3.2 years ago by ▴ 50
0
votes
0
replies
822
views
Comment: C: gene transcription direction
3.2 years ago by 9521ljh ▴ 50
0
votes
0
replies
1.5k
views
Comment: C: where to get Whole Genome Sequencing of Cell line?
3.2 years ago by 9521ljh ▴ 50
0
votes
0
replies
1.5k
views
Comment: C: where to get Whole Genome Sequencing of Cell line?
3.2 years ago by 9521ljh ▴ 50
0
votes
0
replies
1.5k
views
Comment: C: where to get Whole Genome Sequencing of Cell line?
3.2 years ago by 9521ljh ▴ 50
5
votes
5
replies
1.5k
views
where to get Whole Genome Sequencing of Cell line?
genome sequencing sequence
updated 3.2 years ago by ★ 3.1k • written 3.2 years ago by ▴ 50
3
votes
2
replies
566
views
What is best tool for Cohort data of DNA?
next-gen sequencing sequence gene
updated 3.3 years ago by ★ 1.3k • written 3.3 years ago by ▴ 50
0
votes
0
replies
766
views
Answer: C: Why samtools depth error
3.3 years ago by 9521ljh ▴ 50
0
votes
0
replies
766
views
Comment: C: Why samtools depth error
3.3 years ago by 9521ljh ▴ 50
0
votes
1
reply
766
views
Comment: C: Why samtools depth error
3.3 years ago by 9521ljh ▴ 50
0
votes
4
replies
766
views
Why samtools depth error
sequence gene sequencing
3.3 years ago by 9521ljh ▴ 50
1
vote
1
reply
891
views
Absolute segmentation file result
sequencing alignment genome
updated 3.4 years ago by 5.2k • written 3.4 years ago by ▴ 50
0
votes
2
replies
1.1k
views
Comment: C: extract region from the bam file
3.4 years ago by 9521ljh ▴ 50
0
votes
5
replies
1.1k
views
extract region from the bam file
assembly sequencing genome
3.4 years ago by 9521ljh ▴ 50
2
votes
2
replies
545
views
How to mapping DNA read pairs to reference according to particular gene ?
genome next-gen sequencing gene assembly
3.4 years ago by 9521ljh ▴ 50
0
votes
1
reply
473
views
Varscan parameters(options) value
genome sequencing sequence snp
updated 3.5 years ago by 20 • written 3.6 years ago by ▴ 50
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