Question: How to mapping DNA read pairs to reference according to particular gene ?
1
gravatar for 9521ljh
12 months ago by
9521ljh20
9521ljh20 wrote:

i have tumor.fasta file and i want to mapping it to reference Only TP53 region

How can i ?

ADD COMMENTlink written 12 months ago by 9521ljh20
1

By getting TP53 region sequence you are interested in as fasta format file. Followed by using blat (http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/ ) to do alignment of your tumor.fasta to the reference.

ADD REPLYlink modified 12 months ago • written 12 months ago by genomax85k

What does tumor.fasta contain?

ADD REPLYlink written 12 months ago by ATpoint36k
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