User: zhao03

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zhao030
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Posts by zhao03

<prev • 13 results • page 1 of 2 • next >
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Where can I download the length of short and long arms for each chromosome
... Where can I download the length of short and long arm for each chromosome? Thank you ...
genome snp sequencing written 8 days ago by zhao030 • updated 7 days ago by zx87547.5k
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Answer: A: how to change the heatmap color of ConsensusClusterPlus
... I have an another question, how to display the sample name as colnames or rownames when we plot heatmap? thank you very much! ...
written 13 days ago by zhao030
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Answer: A: how to change the heatmap color of ConsensusClusterPlus
... sorry , i forget to read manual . tmyPal=c("blue","red")) it can change colors ...
written 13 days ago by zhao030
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how to change the heatmap color of ConsensusClusterPlus
... R package "ConsensusClusterPlus " can be used to cluster samples. but how to change the heatmap colors, i can not find the setting. results = ConsensusClusterPlus(d,maxK=6,reps=50,pItem=0.8,pFeature=1,title=title,clusterAlg="hc",distance="pearson",seed=1262118388.71279,plot="png") thank you for y ...
gene rna-seq written 13 days ago by zhao030
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Comment: A: how to use Cufflinks to detect junction
... thank you. In fact , i want to extract splice junctions using difference methods, including from BAM file. ...
written 26 days ago by zhao030
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Comment: C: how to use Cufflinks to detect junction
... thanks, I apologized for not being able to clearly describe my problem. yes, there is a file sorted junctions called SJ.out.tab, however, most papers i read used bam file to extract junctions , and two popular tools for isoform quantification, MISO and Cufflinks(ref: Challenges in estimating percent ...
written 28 days ago by zhao030
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Comment: A: how to use Cufflinks to detect junction
... i want to obtain splice junctions based on mapping result of STAR ...
written 28 days ago by zhao030
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how to use Cufflinks to detect junction
... can the cufflinks be used to discover splice junction ? OR other tools can obtain splice junctions? thank you for your answer! ...
assembly next-gen rna-seq written 28 days ago by zhao030
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Comment: A: Convert RefseqID to EntrezID
... I am not sure, but you can try convert on DAVID or use Ensembl,http://grch37.ensembl.org/index.html ...
written 4 weeks ago by zhao030
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Answer: A: Arabidopsis Gene ID Conversion (BioMart, CLC Genomics Workbench Output)
... Hi This is a website tool for ID Conversion https://biotools.fr/human/refseq_symbol_converter ...
written 5 weeks ago by zhao030

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