User: zhao03

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zhao0320
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New User
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5 days, 17 hours ago
Joined:
9 months, 1 week ago
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z*************@outlook.com

Posts by zhao03

<prev • 24 results • page 1 of 3 • next >
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the difference between RNA-seq FPKM and Affymetrix array on gene expression
... I build a model based on RNA-seq FPKM value , can i directly apply the Affymetrix array gene expression value to validate the model? how to transform Affymetrix array data into FPKM value? thank you very much! ...
gene assembly rna-seq written 11 days ago by zhao0320 • updated 11 days ago by dsull630
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where can i download reference file to match mouse and human gene
... where can i download reference file to match mouse and human gene? general format just like Apoh(mouse)-APOH(human). thank you very much! ...
gene genome written 12 days ago by zhao0320
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Answer: A: R tools to display SNVs and CNVs at the same plot?
... it is very useful , thank you very much! ...
written 12 days ago by zhao0320
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R tools to display SNVs and CNVs at the same plot?
... Is there any R tools can display the SNVs and CNVs at the same plot? I want to show the situation that like TP53 occurred mutation and CNV amplification at the same time figure 1 form the paper PMID :31063779 DOI: 10.1053/j.gastro.2019.05.001 ...
genome R snp written 13 days ago by zhao0320
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Comment: C: how to change the heatmap color of ConsensusClusterPlus
... I can not display sample names as column names. but *results[[2]][["consensusClass"]]* and *results[[2]][["consensusTree"]]["order"]* can help us to find out which samples in clusters ...
written 17 days ago by zhao0320
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Answer: A: Protein-protein interaction pathway analysis
... you can try to use clusterProfiler, a R package for enrichment ...
written 17 days ago by zhao0320
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Comment: A: How do I install the R package on GitHub with bioconda
... I got it, thank you very much. ...
written 11 weeks ago by zhao0320
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Comment: A: How do I install the R package on GitHub with bioconda
... I added the channels, but it is not correct. Is there some advice # conda config --add channels https://github.com/dviraran # conda install xxx Collecting package metadata: failed UnavailableInvalidChannel: The channel is not accessible or is invalid. channel name: d ...
written 11 weeks ago by zhao0320 • updated 11 weeks ago by zx87548.8k
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How do I install the R package on GitHub with bioconda
... Hi, I try to install 'xxx' package on GitHub with biconda, should i add channels of github, Do I need to add a full the full URL of this package (https://github.com/dviraran/xxx) or just Github URL (https://github.com/)? ~# conda install xxx Collecting package metadata: done Solving env ...
R bioconda rna-seq written 11 weeks ago by zhao0320
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Install xCell R package form GitHub
... Hi, I want to install the package, but R warns the error devtools::install_github('dviraran/xCell') Downloading GitHub repo dviraran/xCell@master Error in utils::download.file(url, path, method = download_method(), quiet = quiet, : 无法打开URL'https://api.github.com/repos/dviraran/x ...
R written 11 weeks ago by zhao0320 • updated 9 weeks ago by Biostar ♦♦ 20

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