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10
votes
5
replies
3.8k
views
Where can I download the length of short and long arms for each chromosome
sequencing SNP genome
updated 3 months ago by 135k • written 4.3 years ago by ▴ 60
7
votes
6
replies
6.1k
views
7 follow
java.lang.IllegalArgumentException: samples cannot be empty when i run gatk-package-4.1.4.1-local.jar HaplotypeCaller
snp rna-seq sequencing
updated 10 months ago by 3.0k • written 3.6 years ago by ▴ 60
0
votes
0
replies
525
views
how to find variation gene in specific state in monocle
RNA-Seq R
2.8 years ago by zhao03 ▴ 60
0
votes
5
replies
1.8k
views
how to change the heatmap color of ConsensusClusterPlus
RNA-Seq gene
updated 2.9 years ago by • 0 • written 4.3 years ago by ▴ 60
0
votes
2
replies
1.4k
views
Got the negative value when used ComBat to Adjust batch effects
R software error
updated 3.0 years ago by 77k • written 3.2 years ago by ▴ 60
0
votes
1
reply
606
views
how can i evaluate the different between two samples of distribution of peaks in the genome of chip-seq
ChIP-Seq
3.0 years ago by zhao03 ▴ 60
0
votes
0
replies
709
views
why the different peaks by HINT-ATAC all under the zero line and motif Activity Score are negativate
ChIP-Seq
3.2 years ago by zhao03 ▴ 60
0
votes
2
replies
2.5k
views
"Idents" can not be use in seurat
RNA-Seq software error
updated 3.2 years ago by ▴ 720 • written 3.2 years ago by ▴ 60
0
votes
0
replies
26k
views
Answer: A: removing batch effects using ComBat and SVA
3.2 years ago by zhao03 ▴ 60
3
votes
2
replies
957
views
are there some tools or software can find the different peak of ATAC-seq
ChIP-Seq genome
updated 3.2 years ago by ★ 2.0k • written 3.2 years ago by ▴ 60
0
votes
0
replies
841
views
what is the result files of MACS2 bdgdiff
ChIP-Seq ATCA-seq
3.2 years ago by zhao03 ▴ 60
1
vote
1
reply
848
views
what is the mean of "%" in DAVID Gene-annotation enrichment analysis
gene software error
updated 3.4 years ago by 26k • written 3.4 years ago by ▴ 60
0
votes
1
reply
489
views
mutect2 can not identify the indel that can be found in bam file
SNP sequencing genome
updated 3.5 years ago by 77k • written 3.5 years ago by ▴ 60
0
votes
0
replies
1.6k
views
Answer: A: where can i download small_exac_common_3_hg19.vcf and idx file for GATK GetPileu
3.5 years ago by zhao03 ▴ 60
0
votes
1
reply
1.6k
views
where can i download small_exac_common_3_hg19.vcf and idx file for GATK GetPileupSummaries
snp genome software error
3.5 years ago by zhao03 ▴ 60
0
votes
1
reply
1.3k
views
the warning of GATK CreateSomaticPanelOfNormals
SNP genome sequencing
updated 3.5 years ago by 86k • written 3.5 years ago by ▴ 60
0
votes
1
reply
982
views
Question: the warning of GATK CreateSomaticPanelOfNormals
snp software error sequencing
3.5 years ago by zhao03 ▴ 60
0
votes
0
replies
982
views
Answer: A: Question: the warning of GATK CreateSomaticPanelOfNormals
3.5 years ago by zhao03 ▴ 60
0
votes
0
replies
6.1k
views
Answer: A: java.lang.IllegalArgumentException: samples cannot be empty when i run gatk-pac
3.6 years ago by zhao03 ▴ 60
1
vote
1
reply
7.3k
views
Answer: A: How to visualize GSEA results in a graph using R
3.8 years ago by zhao03 ▴ 60
1
vote
1
reply
1.3k
views
the difference between RNA-seq FPKM and Affymetrix array on gene expression
RNA-Seq gene Assembly
updated 3.8 years ago by ★ 4.8k • written 3.8 years ago by ▴ 60
2
votes
1
reply
482
views
where can i download reference file to match mouse and human gene
gene genome
3.8 years ago by zhao03 ▴ 60
2
votes
2
replies
1.1k
views
R tools to display SNVs and CNVs at the same plot?
R SNP genome
3.8 years ago by zhao03 ▴ 60
0
votes
0
replies
1.1k
views
Answer: A: R tools to display SNVs and CNVs at the same plot?
3.8 years ago by zhao03 ▴ 60
0
votes
0
replies
1.8k
views
Comment: C: how to change the heatmap color of ConsensusClusterPlus
3.9 years ago by zhao03 ▴ 60
0
votes
0
replies
971
views
Answer: A: Protein-protein interaction pathway analysis
3.9 years ago by zhao03 ▴ 60
0
votes
1
reply
2.0k
views
Install xCell R package form GitHub
R
updated 4.0 years ago by 20 • written 4.0 years ago by ▴ 60
5
votes
5
replies
3.3k
views
How do I install the R package on GitHub with bioconda
R RNA-Seq bioconda
4.0 years ago by zhao03 ▴ 60
0
votes
0
replies
3.3k
views
Comment: A: How do I install the R package on GitHub with bioconda
4.0 years ago by zhao03 ▴ 60
0
votes
0
replies
3.3k
views
Comment: A: How do I install the R package on GitHub with bioconda
updated 4.0 years ago by 11k • written 4.0 years ago by ▴ 60
3
votes
5
replies
4.0k
views
i can't find the SRR sample on NCBI FTP, such as SRR018260
RNA-Seq software error
updated 4.2 years ago by 13k • written 4.2 years ago by ▴ 60
0
votes
1
reply
1.8k
views
Comment: A: how to change the heatmap color of ConsensusClusterPlus
4.3 years ago by zhao03 ▴ 60
0
votes
0
replies
1.8k
views
Answer: A: how to change the heatmap color of ConsensusClusterPlus
4.3 years ago by zhao03 ▴ 60
0
votes
0
replies
1.0k
views
Comment: A: how to use Cufflinks to detect junction
4.4 years ago by zhao03 ▴ 60
0
votes
5
replies
1.0k
views
how to use Cufflinks to detect junction
RNA-Seq rna-seq next-gen assembly
4.4 years ago by zhao03 ▴ 60
0
votes
1
reply
1.0k
views
Comment: C: how to use Cufflinks to detect junction
4.4 years ago by zhao03 ▴ 60
0
votes
1
reply
1.0k
views
Comment: A: how to use Cufflinks to detect junction
4.4 years ago by zhao03 ▴ 60
0
votes
0
replies
2.5k
views
Comment: A: Convert RefseqID to EntrezID
4.4 years ago by zhao03 ▴ 60
0
votes
0
replies
2.3k
views
Answer: A: Arabidopsis Gene ID Conversion (BioMart, CLC Genomics Workbench Output)
4.4 years ago by zhao03 ▴ 60
0
votes
1
reply
701
views
the error occurred when I extracted unique mapped read by samtools and assembled transcript by StingTie
assembly sequence RNA-Seq
updated 3 months ago by 40k • written 4.6 years ago by ▴ 60
0
votes
0
replies
2.9k
views
Answer: A: The Calculation of Enrichment Score and Group Enrichment Score in gene set enric
4.6 years ago by zhao03 ▴ 60
0
votes
0
replies
2.9k
views
Comment: A: download CNV file for breast cancer BRCA from TCGA website
4.6 years ago by zhao03 ▴ 60
42 results • Page 1 of 1
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