Question: are there some tools or software can find the different peak of ATAC-seq
0
gravatar for zhao03
4 weeks ago by
zhao0330
zhao0330 wrote:

Hi i got the ATAC-seq peaks by MACS2 cellpeak, How can i find the different peak between case and cotrol? thank you!

chip-seq genome • 139 views
ADD COMMENTlink modified 4 weeks ago by Rory Stark730 • written 4 weeks ago by zhao0330
2
gravatar for Rory Stark
4 weeks ago by
Rory Stark730
University of Cambridge, Cancer Research UK - Cambridge Institute
Rory Stark730 wrote:

Another Bioconductor package, DiffBind, is often used to find differential ATAC peaks using a straightforward ChIP-seq workflow.

ADD COMMENTlink written 4 weeks ago by Rory Stark730
1
gravatar for eyleen.corrales
4 weeks ago by
eyleen.corrales20 wrote:

You could take a look at this paper: https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-020-00342-y . They provide the scripts for doing what you want to do with csaw

ADD COMMENTlink modified 4 weeks ago • written 4 weeks ago by eyleen.corrales20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1555 users visited in the last hour