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How important is aligning BAM files to the appropriate design file?
gatk sequencing genomics wes bam
4.5 years ago by jon.klonowski ▴ 210
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1
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6.0k
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Comment: C: Version history and design files for exome kits from Agilent, Roche(Nimblegen),
4.6 years ago by jon.klonowski ▴ 210
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1
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6.0k
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Comment: A: Version history and design files for exome kits from Agilent, Roche(Nimblegen),
4.6 years ago by jon.klonowski ▴ 210
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0
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600
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Multiple Sequencing Platforms, One Interval File?
WES sequencing GATK
4.6 years ago by jon.klonowski ▴ 210
1
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1
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1.4k
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Considerations when merging a gVCF with a VCF?
vcf bcftools gvcf gatk WES
updated 4.8 years ago by • 0 • written 4.8 years ago by ▴ 210
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2.3k
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Comment: C: plink2: no file/directory libgfortran, search has found libgfortran
4.8 years ago by jon.klonowski ▴ 210
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2.3k
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Comment: C: plink2: no file/directory libgfortran, search has found libgfortran
4.8 years ago by jon.klonowski ▴ 210
1
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4
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2.3k
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plink2: no file/directory libgfortran, search has found libgfortran
plink genetics vcf sequencing WES
updated 4.8 years ago by ★ 30k • written 4.8 years ago by ▴ 210
0
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1
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2.7k
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Comment: A: join vcf file with annotations file?
4.8 years ago by jon.klonowski ▴ 210
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1.1k
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Answer: A: Gene Location File - One Gene One Genomic Interval
4.8 years ago by jon.klonowski ▴ 210
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2
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1.1k
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Gene Location File - One Gene One Genomic Interval
genomics genome sequencing SNP burden
4.8 years ago by jon.klonowski ▴ 210
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0
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5.0k
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Comment: C: Downloadable File With Gene Locations
4.8 years ago by jon.klonowski ▴ 210
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2
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2.8k
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gatk SelectVariants odd behavior
gatk selectvariants vcf filtering SNP
updated 5.8 years ago by • 0 • written 6.4 years ago by ▴ 210
8
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10
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4.6k
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6 follow
Is Ingenuity Pathway Analysis still relevant for analyzing RNA-seq data?
IPA RNA-Seq NGS dataanalysis
updated 6.2 years ago by ▴ 370 • written 6.2 years ago by ▴ 210
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1
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2.9k
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
updated 6.4 years ago by 16k • written 6.4 years ago by ▴ 210
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1
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2.9k
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
updated 6.4 years ago by 16k • written 6.4 years ago by ▴ 210
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0
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1.6k
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Comment: C: BCFTools Query: Avoid grouping Alt Alleles
6.4 years ago by jon.klonowski ▴ 210
3
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5
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2.9k
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BCF Tools Filter on 1000Genomes Annotation
bcftools vcftools annotation filter
6.4 years ago by jon.klonowski ▴ 210
1
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0
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9.5k
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Answer: A: grep command on VCF
6.4 years ago by jon.klonowski ▴ 210
2
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5
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9.5k
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grep command on VCF
vcf unix grep bcf
6.4 years ago by jon.klonowski ▴ 210
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0
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9.5k
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Comment: C: grep command on VCF
6.4 years ago by jon.klonowski ▴ 210
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0
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2.9k
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
6.4 years ago by jon.klonowski ▴ 210
0
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0
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9.5k
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Comment: C: grep command on VCF
6.4 years ago by jon.klonowski ▴ 210
0
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1
reply
1.6k
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BCFTools Query: Avoid grouping Alt Alleles
bcftools vcf 1000genomes annotation
6.4 years ago by jon.klonowski ▴ 210
0
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0
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5.7k
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Comment: C: PLINK vcf to binary files error: Unused command line option: --vcf
6.4 years ago by jon.klonowski ▴ 210
0
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1
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5.7k
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Comment: C: PLINK vcf to binary files error: Unused command line option: --vcf
6.4 years ago by jon.klonowski ▴ 210
2
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5
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5.7k
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PLINK vcf to binary files error: Unused command line option: --vcf
plink vcf genomics
updated 6.4 years ago by 11k • written 6.4 years ago by ▴ 210
1
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0
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40k
views
Comment: C: Sort VCF File by Position?
6.5 years ago by jon.klonowski ▴ 210
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