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What is a good Standardized Beta/standardized regression coefficient in a genetics study?
regression size genomics effect genetics beta
4 weeks ago by jon.klonowski ▴ 80
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5.7k
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Comment: Comment: Pararellization in GATK 4
3 months ago by jon.klonowski ▴ 80
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1
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248
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gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
annontation rare genomics variant gnomad
4 months ago by jon.klonowski ▴ 80
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0
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248
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Answer: Answer: gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
4 months ago by jon.klonowski ▴ 80
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0
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447
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Answer: Answer: Merged Reference Panel using WES data
4 months ago by jon.klonowski ▴ 80
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0
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398
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Comment: Comment: gnomAD reports variants with "NA" allele count and allele frequency
4 months ago by jon.klonowski ▴ 80
0
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0
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254
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UCSC parameters for converting between human genome builds
genomics bed ucsc genotyping
5 months ago by jon.klonowski ▴ 80
0
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0
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167
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How important is aligning BAM files to the appropriate design file?
gatk sequencing genomics wes bam
5 months ago by jon.klonowski ▴ 80
0
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1
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3.4k
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Comment: C: Version history and design files for exome kits from Agilent, Roche(Nimblegen),
6 months ago by jon.klonowski ▴ 80
0
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1
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3.4k
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Comment: A: Version history and design files for exome kits from Agilent, Roche(Nimblegen),
6 months ago by jon.klonowski ▴ 80
0
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0
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148
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Multiple Sequencing Platforms, One Interval File?
WES sequencing GATK
6 months ago by jon.klonowski ▴ 80
0
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1
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363
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Considerations when merging a gVCF with a VCF?
vcf bcftools gvcf gatk WES
updated 9 months ago by • 0 • written 9 months ago by ▴ 80
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413
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Comment: C: plink2: no file/directory libgfortran, search has found libgfortran
9 months ago by jon.klonowski ▴ 80
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0
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413
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Comment: C: plink2: no file/directory libgfortran, search has found libgfortran
9 months ago by jon.klonowski ▴ 80
0
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4
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413
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plink2: no file/directory libgfortran, search has found libgfortran
plink genetics vcf sequencing WES
updated 9 months ago by ★ 13k • written 9 months ago by ▴ 80
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853
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Comment: A: join vcf file with annotations file?
9 months ago by jon.klonowski ▴ 80
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2
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253
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Gene Location File - One Gene One Genomic Interval
genomics genome sequencing SNP burden
9 months ago by jon.klonowski ▴ 80
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0
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253
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Answer: A: Gene Location File - One Gene One Genomic Interval
9 months ago by jon.klonowski ▴ 80
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3.1k
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Comment: C: Downloadable File With Gene Locations
9 months ago by jon.klonowski ▴ 80
0
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2
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1.6k
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gatk SelectVariants odd behavior
gatk selectvariants vcf filtering SNP
updated 22 months ago by • 0 • written 2.4 years ago by ▴ 80
8
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10
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1.8k
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6 follow
Is Ingenuity Pathway Analysis still relevant for analyzing RNA-seq data?
IPA RNA-Seq NGS dataanalysis
updated 2.2 years ago by ▴ 250 • written 2.2 years ago by ▴ 80
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1
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1.2k
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
updated 2.4 years ago by 14k • written 2.4 years ago by ▴ 80
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1
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1.2k
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
updated 2.4 years ago by 14k • written 2.4 years ago by ▴ 80
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0
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733
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Comment: C: BCFTools Query: Avoid grouping Alt Alleles
2.4 years ago by jon.klonowski ▴ 80
3
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5
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1.2k
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BCF Tools Filter on 1000Genomes Annotation
bcftools vcftools annotation filter
2.4 years ago by jon.klonowski ▴ 80
1
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5
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4.3k
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grep command on VCF
vcf unix grep bcf
2.4 years ago by jon.klonowski ▴ 80
1
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0
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4.3k
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Answer: A: grep command on VCF
2.4 years ago by jon.klonowski ▴ 80
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0
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4.3k
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Comment: C: grep command on VCF
2.4 years ago by jon.klonowski ▴ 80
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0
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1.2k
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
2.4 years ago by jon.klonowski ▴ 80
0
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0
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4.3k
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Comment: C: grep command on VCF
2.4 years ago by jon.klonowski ▴ 80
0
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1
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733
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BCFTools Query: Avoid grouping Alt Alleles
bcftools vcf 1000genomes annotation
2.4 years ago by jon.klonowski ▴ 80
0
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0
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2.4k
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Comment: C: PLINK vcf to binary files error: Unused command line option: --vcf
2.4 years ago by jon.klonowski ▴ 80
0
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1
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2.4k
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Comment: C: PLINK vcf to binary files error: Unused command line option: --vcf
2.4 years ago by jon.klonowski ▴ 80
0
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5
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2.4k
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PLINK vcf to binary files error: Unused command line option: --vcf
plink vcf genomics
updated 2.4 years ago by 8.4k • written 2.4 years ago by ▴ 80
1
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0
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13k
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Comment: C: Sort VCF File by Position?
2.5 years ago by jon.klonowski ▴ 80
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