User: psschlogl

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psschlogl20
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1Β week, 2Β days ago
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6Β months, 2Β weeks ago
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Posts by psschlogl

<prev • 23 results • page 1 of 3 • next >
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Comment: C: Get some errors in a biopython code for split a multifasta genomic file
... It is a typo here. Because many sequences worked out. ;) ...
written 5 weeks ago by psschlogl20
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Comment: A: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
... Nice tool...i used and works fine......πŸ‘πŸ™ ...
written 6 weeks ago by psschlogl20
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Comment: C: Some good references for comparisons between the human assemblies annotations?
... Thanks bro. I will check it out. Paulo ...
written 4 months ago by psschlogl20
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Comment: C: Some good references for comparisons between the human assemblies annotations?
... I read the paper. But thank you. ...
written 4 months ago by psschlogl20
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Some good references for comparisons between the human assemblies annotations?
... Hi guys I am interested in some references that describe the gene annotations and give some basic stats and comparisons between the human assemblies 37 and 38. If possible about gff annotations. Thank you all for your time. Paulo ...
genome assembly gff3 written 4 months ago by psschlogl20 • updated 4 months ago by genomax75k
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Comment: C: Python Regular Expressions to extract the transcript ID from lines of GTF file
... Hey Ryan If I want to parse the GRCH38 or 37 transcripts (model transcripts) just from chr22, to use them in kallisto analisys for reads quantifications. I could use your deeptools calling which functions? Paulo ...
written 5 months ago by psschlogl20
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Comment: C: Need help to understand a problem in a R script
... β”œβ”€β”€ UHR_Rep1 β”‚Β Β  β”œβ”€β”€ e2t.ctab β”‚Β Β  β”œβ”€β”€ e_data.ctab β”‚Β Β  β”œβ”€β”€ gene_abundances.tsv β”‚Β Β  β”œβ”€β”€ i2t.ctab β”‚Β Β  β”œβ”€β”€ i_data.ctab β”‚Β Β  β”œβ”€β”€ t_data.ctab β”‚Β Β  └── transcripts.gtf β”œβ”€β”€ UHR_Rep2 β”‚Β Β  β”œβ”€β”€ e2t.ctab β”‚Β Β  β”œβ”€β”€ e_data.ctab β”‚Β Β  β”œβ”€β”€ gene_abundances.tsv β”‚Β Β  β”œβ”€β”€ i2t ...
written 5 months ago by psschlogl20
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5 follow
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Need help to understand a problem in a R script
... Hi guys I am really sorry to bother you to help me on this! I am following a tutorial that I am almost finishing but I got to understand what its going on. I have a csv like this: $>cat UHR_vs_HBR.csv "ids","type","path" "UHR_Rep1","UHR"," /media/paulo/44691167-b916-42ad-87f0-b215c6e ...
R rna-seq written 5 months ago by psschlogl20
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Answer: A: Tutorial RNASEQ problem again!
... Just to let you know, I figured out. In my case I had a supplementary file 1. So I just got the results changing 2 for 1. Anyway Thank you guys! You rock! See ya ...
written 5 months ago by psschlogl20
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Comment: C: Tutorial RNASEQ problem again!
... I did check it out already 8 ( I will try to found it out with the autors. Thanks ...
written 5 months ago by psschlogl20

Latest awards to psschlogl

Scholar 5 months ago, created an answer that has been accepted. For A: Trying to run clustalw with biopython on jupyter notebook
Scholar 6 months ago, created an answer that has been accepted. For A: Trying to run clustalw with biopython on jupyter notebook

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