User: psschlogl

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psschlogl30
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1 month ago
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1 year, 8 months ago
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Posts by psschlogl

<prev • 52 results • page 1 of 6 • next >
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Comment: C: how to download all protein sequnces of a bacteria using ncbi ftp site?
... Yeah that worked. Thanks man. Paulo ...
written 4 weeks ago by psschlogl30
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Comment: C: how to download all protein sequnces of a bacteria using ncbi ftp site?
... Hi Joe hope you are save and well. Why this works: ncbi-genome-download -n -s refseq bacteria --genera Zhihengliuella -l "complete,chromosome" -v -F "cds-fasta" --flat-output -p 4 -r 10 INFO: Using cached summary. Considering the following 1 assemblies for download: GCF_002848265. ...
written 4 weeks ago by psschlogl30
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Comment: C: Merging lots of csv files in on master one
... thanks for your attention and time Steve. 8) ...
written 6 weeks ago by psschlogl30
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Comment: C: Merging lots of csv files in on master one
... I will try it. Thank you ...
written 6 weeks ago by psschlogl30
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Comment: C: Merging lots of csv files in on master one
... I was trying just to avoid using lots of memory loading all that data in my pc. I can try use python, but I want to do this steps in shell. But I appreciate you time. Thank you very much. paulo ...
written 6 weeks ago by psschlogl30
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Merging lots of csv files in on master one
... I guys I have a directory with a bunch of sub directories with lots of csvs. My csvs have two columns (kmer, counts). For each of the sub directories csvs I want keep the first column (that is share with all files) and merge the second column (counts). Ex: cut -d , -f 2 sorted_2.csv | paste - ...
csv bash written 6 weeks ago by psschlogl30 • updated 6 weeks ago by steve2.7k
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R package or other software that I can use data(snps) from 1000genomes and make possible associations with deaths from flu strains
... Hi guys, hope everyone is save and well. I would like to use R packages or any other software (including python packages of course) to use to correlate some snps from different populations from hapmap or 1000genomes and flu strains. Do you have any tip of what package or software could be suitable ...
genome R snp written 6 weeks ago by psschlogl30
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Comment: C: HOw to merge multifasta sequence into a single sequence having only one header?
... Can you keep it the last file .gz? Thanks ...
written 7 weeks ago by psschlogl30
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Comment: C: How to download genome assemblies from NCBI with a list of GCA identifiers?
... thank you. It works very well ...
written 7 weeks ago by psschlogl30
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Comment: C: How to download genome assemblies from NCBI with a list of GCA identifiers?
... There are any way to read the query from a list.txt? ...
written 8 weeks ago by psschlogl30

Latest awards to psschlogl

Popular Question 10 months ago, created a question with more than 1,000 views. For Trying to run clustalw with biopython on jupyter notebook
Supporter 11 months ago, voted at least 25 times.
Scholar 19 months ago, created an answer that has been accepted. For A: Trying to run clustalw with biopython on jupyter notebook
Scholar 20 months ago, created an answer that has been accepted. For A: Trying to run clustalw with biopython on jupyter notebook

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