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2
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36k
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Comment: Comment: installing samtools with conda - overcoming two common errors
5 months ago by psschlogl ▴ 50
0
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0
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3.1k
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Comment: C: how to download all protein sequnces of a bacteria using ncbi ftp site?
3.4 years ago by psschlogl ▴ 50
2
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1
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3.1k
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Comment: C: how to download all protein sequnces of a bacteria using ncbi ftp site?
3.4 years ago by psschlogl ▴ 50
0
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0
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1.5k
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Comment: C: Merging lots of csv files in on master one
3.4 years ago by psschlogl ▴ 50
2
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6
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1.5k
views
Merging lots of csv files in on master one
bash csv
updated 3.4 years ago by ★ 3.5k • written 3.4 years ago by ▴ 50
0
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0
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1.5k
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Comment: C: Merging lots of csv files in on master one
3.4 years ago by psschlogl ▴ 50
0
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1
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1.5k
views
Comment: C: Merging lots of csv files in on master one
3.4 years ago by psschlogl ▴ 50
1
vote
1
reply
727
views
R package or other software that I can use data(snps) from 1000genomes and make possible associations with deaths from flu strains
R snp genome
3.4 years ago by psschlogl ▴ 50
0
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1
reply
12k
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Comment: C: HOw to merge multifasta sequence into a single sequence having only one header?
3.4 years ago by psschlogl ▴ 50
0
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0
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14k
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Comment: C: How to download genome assemblies from NCBI with a list of GCA identifiers?
3.4 years ago by psschlogl ▴ 50
0
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1
reply
14k
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Comment: C: How to download genome assemblies from NCBI with a list of GCA identifiers?
3.4 years ago by psschlogl ▴ 50
0
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0
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26k
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Comment: A: Creating workflows with snakemake and conda
3.5 years ago by psschlogl ▴ 50
0
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0
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740
views
Comment: C: There are any good tutorial or book to help to get some stats in kmer analysis?
3.5 years ago by psschlogl ▴ 50
1
vote
2
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740
views
There are any good tutorial or book to help to get some stats in kmer analysis?
sequence genome
updated 3.5 years ago by ▴ 230 • written 3.5 years ago by ▴ 50
1
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1
reply
585
views
quick question about a degenerated position in motifs
sequence
3.6 years ago by psschlogl ▴ 50
0
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0
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1.4k
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Comment: C: Book recommendation for starting and advancing in Bioinformatics
4.1 years ago by psschlogl ▴ 50
0
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0
replies
1.1k
views
Comment: C: Data randomization for apply some statistics
4.2 years ago by psschlogl ▴ 50
2
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5
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1.1k
views
Data randomization for apply some statistics
sequence proteins fasta
4.2 years ago by psschlogl ▴ 50
0
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0
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1.1k
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Comment: C: Data randomization for apply some statistics
4.2 years ago by psschlogl ▴ 50
0
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0
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1.1k
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Comment: C: Data randomization for apply some statistics
4.2 years ago by psschlogl ▴ 50
0
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0
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4.0k
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Comment: C: Trying to use CD-HIT with a fasta file with 5 mers but not getting any output.
4.2 years ago by psschlogl ▴ 50
0
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0
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4.0k
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Comment: C: Trying to use CD-HIT with a fasta file with 5 mers but not getting any output.
4.2 years ago by psschlogl ▴ 50
1
vote
2
replies
4.0k
views
Comment: C: Trying to use CD-HIT with a fasta file with 5 mers but not getting any output.
4.2 years ago by psschlogl ▴ 50
0
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1
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4.0k
views
Comment: C: Trying to use CD-HIT with a fasta file with 5 mers but not getting any output.
4.2 years ago by psschlogl ▴ 50
0
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2
replies
4.0k
views
Comment: C: Trying to use CD-HIT with a fasta file with 5 mers but not getting any output.
4.2 years ago by psschlogl ▴ 50
0
votes
1
reply
4.0k
views
Comment: C: Trying to use CD-HIT with a fasta file with 5 mers but not getting any output.
4.2 years ago by psschlogl ▴ 50
0
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0
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4.0k
views
Comment: C: Trying to use CD-HIT with a fasta file with 5 mers but not getting any output.
4.2 years ago by psschlogl ▴ 50
0
votes
1
reply
890
views
Comment: C: Quick question about expected codon frequencies
4.3 years ago by psschlogl ▴ 50
0
votes
1
reply
1.9k
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Comment: C: How can I count aminoacid residues from a HUGE compressed fasta file?
4.3 years ago by psschlogl ▴ 50
0
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0
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965
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Comment: C: There are any way to conduct a motif search with pfam or CDD-NCBI with a big fas
4.3 years ago by psschlogl ▴ 50
0
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1
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1.0k
views
Comment: C: Get some errors in a biopython code for split a multifasta genomic file
4.5 years ago by psschlogl ▴ 50
0
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1
reply
16k
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Comment: A: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
4.5 years ago by psschlogl ▴ 50
2
votes
6
replies
7.8k
views
Trying to run clustalw with biopython on jupyter notebook
custalw biopython
updated 4.6 years ago by • 0 • written 4.9 years ago by ▴ 50
0
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0
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900
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Comment: C: Some good references for comparisons between the human assemblies annotations?
4.8 years ago by psschlogl ▴ 50
5
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4
replies
900
views
Some good references for comparisons between the human assemblies annotations?
assembly genome gff3
updated 4.8 years ago by 141k • written 4.8 years ago by ▴ 50
0
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0
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900
views
Comment: C: Some good references for comparisons between the human assemblies annotations?
4.8 years ago by psschlogl ▴ 50
0
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1
reply
5.4k
views
Comment: C: Python Regular Expressions to extract the transcript ID from lines of GTF file
4.8 years ago by psschlogl ▴ 50
12
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8
replies
1.9k
views
Need help to understand a problem in a R script
R rna-seq
4.8 years ago by psschlogl ▴ 50
0
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1
reply
1.9k
views
Comment: C: Need help to understand a problem in a R script
4.8 years ago by psschlogl ▴ 50
2
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0
replies
1.0k
views
Answer: A: Tutorial RNASEQ problem again!
4.9 years ago by psschlogl ▴ 50
6
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5
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1.0k
views
Tutorial RNASEQ problem again!
rna-seq R
4.9 years ago by psschlogl ▴ 50
0
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0
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1.0k
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Comment: C: Tutorial RNASEQ problem again!
4.9 years ago by psschlogl ▴ 50
0
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0
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1.0k
views
Comment: C: Tutorial RNASEQ problem again!
4.9 years ago by psschlogl ▴ 50
0
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0
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5.6k
views
Comment: C: how can I align several fastq files with hisat2 and get htseq-count
4.9 years ago by psschlogl ▴ 50
0
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1
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5.6k
views
Comment: C: how can I align several fastq files with hisat2 and get htseq-count
updated 4.9 years ago by 104k • written 4.9 years ago by ▴ 50
2
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1
reply
2.0k
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HISAT2 alignment out of memory
next-gen alignment Assembly RNA-Seq
4.9 years ago by psschlogl ▴ 50
0
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0
replies
899
views
Comment: C: SAM doubt about sampileup
4.9 years ago by psschlogl ▴ 50
4
votes
2
replies
899
views
SAM doubt about sampileup
sequence RNA-Seq
updated 4.9 years ago by 161k • written 4.9 years ago by ▴ 50
0
votes
1
reply
16k
views
Answer: A: Extraction of first sequences from a big fasta file
4.9 years ago by psschlogl ▴ 50
0
votes
1
reply
1.1k
views
Comment: C: Biopython problem again
4.9 years ago by psschlogl ▴ 50
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