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Answer: Answer: GrCh37 or GrCh38? That is the question.
11 weeks ago by Papyrus ★ 3.1k
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1.2k
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Comment: Comment: How to identify additional SNPs on EPICv2
5 months ago by Papyrus ★ 3.1k
2
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2
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1.2k
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Answer: Answer: How to identify additional SNPs on EPICv2
5 months ago by Papyrus ★ 3.1k
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0
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905
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Comment: Comment: After doublet detection in 10x scRNA-Seq data, there is still evidence of double
6 months ago by Papyrus ★ 3.1k
1
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0
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740
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Comment: Comment: Enrichment analyses (GO TERM etc)
6 months ago by Papyrus ★ 3.1k
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0
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1.1k
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Comment: Comment: Annotating Illumna epic probes
7 months ago by Papyrus ★ 3.1k
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1
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1.1k
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Comment: Comment: Annotating Illumna epic probes
7 months ago by Papyrus ★ 3.1k
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1
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559
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Answer: Answer: statistical testing for MS/MS proteomics bulkd samples
10 months ago by Papyrus ★ 3.1k
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1
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1.8k
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Comment: Comment: error from msigdbr
13 months ago by Papyrus ★ 3.1k
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1
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1.8k
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Answer: Answer: error from msigdbr
13 months ago by Papyrus ★ 3.1k
1
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1
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1.1k
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Comment: Comment: How can I create an aesthetic gene neighborhood diagram from CSV data to showcas
13 months ago by Papyrus ★ 3.1k
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0
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777
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Comment: Comment: Creating a Single-Cell Signature Matrix for Bulk RNA-seq Deconvolution
14 months ago by Papyrus ★ 3.1k
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2.8k
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Comment: Comment: Logfold change (Limma Package) in methylation association studies
15 months ago by Papyrus ★ 3.1k
2
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0
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1.2k
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Comment: Comment: Normalization of samples with very different transcriptomic profiles
15 months ago by Papyrus ★ 3.1k
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0
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3.2k
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Answer: Answer: Illumina EPIC v2 IlmnIDs and probe names
15 months ago by Papyrus ★ 3.1k
0
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0
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6.5k
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Comment: Comment: Difference in Bismark output methylation call files and coverage files
16 months ago by Papyrus ★ 3.1k
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0
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723
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Comment: Comment: minfi::getQC - badsamplecutoff 10.5
16 months ago by Papyrus ★ 3.1k
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2.2k
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Comment: Comment: Seurat v5 and how to correctly integrate across multiple experiments
16 months ago by Papyrus ★ 3.1k
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0
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1.5k
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Answer: Answer: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
16 months ago by Papyrus ★ 3.1k
2
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1
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1.1k
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Answer: Answer: Is therer any suggestions on mapping rate of WGBS data?
16 months ago by Papyrus ★ 3.1k
0
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0
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1.5k
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Comment: Comment: DESeq: too low p-value for RNAseq
17 months ago by Papyrus ★ 3.1k
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1
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1.5k
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Comment: Comment: DESeq: too low p-value for RNAseq
17 months ago by Papyrus ★ 3.1k
1
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0
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994
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Comment: Comment: representing PCs as marginal distribution on x and Y acis
18 months ago by Papyrus ★ 3.1k
1
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1
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994
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Answer: Answer: representing PCs as marginal distribution on x and Y acis
18 months ago by Papyrus ★ 3.1k
2
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2
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1.3k
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Answer: Answer: Tutorial for analyzing WGBS data
18 months ago by Papyrus ★ 3.1k
1
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1
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2.5k
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
19 months ago by Papyrus ★ 3.1k
1
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2
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2.5k
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
19 months ago by Papyrus ★ 3.1k
2
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1
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846
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Answer: Answer: Do people use M-value in WGBS?
21 months ago by Papyrus ★ 3.1k
2
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1
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1.4k
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Comment: Comment: 4 Fastq files for a single run generated by 10X
21 months ago by Papyrus ★ 3.1k
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1
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815
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Comment: Comment: Fisher exact test on different gene sets
23 months ago by Papyrus ★ 3.1k
2
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0
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1.2k
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Answer: Answer: IDAT or Txt MINFI or LIMMA?
2.1 years ago by Papyrus ★ 3.1k
0
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0
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2.5k
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Comment: Comment: Gene Set Comparison Without Expression Data
2.1 years ago by Papyrus ★ 3.1k
1
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1
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2.5k
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Comment: Comment: Gene Set Comparison Without Expression Data
2.1 years ago by Papyrus ★ 3.1k
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1
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2.5k
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Comment: Comment: Gene Set Comparison Without Expression Data
2.1 years ago by Papyrus ★ 3.1k
1
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0
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2.1k
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
2.1 years ago by Papyrus ★ 3.1k
2
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1
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1.5k
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Answer: Answer: count number of GC for a given genomic ranges
2.1 years ago by Papyrus ★ 3.1k
0
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1
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1.6k
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Answer: Answer: DMR Analysis for RRBS: what annotation file to I use?
2.1 years ago by Papyrus ★ 3.1k
0
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0
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1.3k
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Comment: Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s
2.1 years ago by Papyrus ★ 3.1k
1
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0
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965
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Comment: Comment: Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq da
2.2 years ago by Papyrus ★ 3.1k
1
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0
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2.0k
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Answer: Answer: How to perfrom a statistical test on a 3-way Venn Diagram
2.2 years ago by Papyrus ★ 3.1k
1
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1
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2.5k
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Comment: Comment: Gene Set Comparison Without Expression Data
2.2 years ago by Papyrus ★ 3.1k
1
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1
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4.9k
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Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
2.2 years ago by Papyrus ★ 3.1k
12
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7
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4.9k
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Tools for bulk RNA-seq celltype deconvolution
composition deconvolution bulk RNA-seq celltypes
updated 2.2 years ago by • 0 • written 4.2 years ago by ★ 3.1k
0
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1
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2.5k
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Comment: Comment: Gene Set Comparison Without Expression Data
2.2 years ago by Papyrus ★ 3.1k
2
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1
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2.5k
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Answer: Answer: Gene Set Comparison Without Expression Data
2.2 years ago by Papyrus ★ 3.1k
0
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0
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1.4k
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Comment: Comment: Boxplot of contrasts and genes together
2.2 years ago by Papyrus ★ 3.1k
0
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1
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1.4k
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Answer: Answer: Boxplot of contrasts and genes together
2.2 years ago by Papyrus ★ 3.1k
2
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1
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1.7k
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Comment: Comment: Blacklist for bacterial genome [ChIPseq]?
2.2 years ago by Papyrus ★ 3.1k
1
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0
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963
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Comment: Comment: Choosing the right batch effect control algorithm for bulk RNA-seq data meta-ana
2.2 years ago by Papyrus ★ 3.1k
1
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1
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2.1k
views
Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
2.3 years ago by Papyrus ★ 3.1k
343 results • Page 1 of 7
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