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398
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Comment: Comment: DESeq: too low p-value for RNAseq
20 days ago by Papyrus ★ 2.9k
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1
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398
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Comment: Comment: DESeq: too low p-value for RNAseq
21 days ago by Papyrus ★ 2.9k
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0
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370
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Comment: Comment: representing PCs as marginal distribution on x and Y acis
5 weeks ago by Papyrus ★ 2.9k
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1
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370
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Answer: Answer: representing PCs as marginal distribution on x and Y acis
5 weeks ago by Papyrus ★ 2.9k
2
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2
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433
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Answer: Answer: Tutorial for analyzing WGBS data
6 weeks ago by Papyrus ★ 2.9k
1
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1
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777
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
8 weeks ago by Papyrus ★ 2.9k
1
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2
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777
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
8 weeks ago by Papyrus ★ 2.9k
2
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1
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372
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Answer: Answer: Do people use M-value in WGBS?
4 months ago by Papyrus ★ 2.9k
2
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1
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596
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Comment: Comment: 4 Fastq files for a single run generated by 10X
4 months ago by Papyrus ★ 2.9k
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1
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362
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Comment: Comment: Fisher exact test on different gene sets
6 months ago by Papyrus ★ 2.9k
2
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0
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611
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Answer: Answer: IDAT or Txt MINFI or LIMMA?
8 months ago by Papyrus ★ 2.9k
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
8 months ago by Papyrus ★ 2.9k
1
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
8 months ago by Papyrus ★ 2.9k
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1
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
8 months ago by Papyrus ★ 2.9k
0
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0
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943
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
8 months ago by Papyrus ★ 2.9k
2
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1
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783
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Answer: Answer: count number of GC for a given genomic ranges
8 months ago by Papyrus ★ 2.9k
0
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1
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758
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Answer: Answer: DMR Analysis for RRBS: what annotation file to I use?
8 months ago by Papyrus ★ 2.9k
0
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0
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501
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Comment: Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s
9 months ago by Papyrus ★ 2.9k
1
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0
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517
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Comment: Comment: Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq da
9 months ago by Papyrus ★ 2.9k
1
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0
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953
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Answer: Answer: How to perfrom a statistical test on a 3-way Venn Diagram
9 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
1
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1
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3.0k
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Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
9 months ago by Papyrus ★ 2.9k
12
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7
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3.0k
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Tools for bulk RNA-seq celltype deconvolution
composition deconvolution bulk RNA-seq celltypes
updated 9 months ago by • 0 • written 2.8 years ago by ★ 2.9k
0
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1
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
2
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1
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1.2k
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Answer: Answer: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
0
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0
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758
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Comment: Comment: Boxplot of contrasts and genes together
10 months ago by Papyrus ★ 2.9k
0
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1
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758
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Answer: Answer: Boxplot of contrasts and genes together
10 months ago by Papyrus ★ 2.9k
2
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1
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848
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Comment: Comment: Blacklist for bacterial genome [ChIPseq]?
10 months ago by Papyrus ★ 2.9k
1
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0
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481
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Comment: Comment: Choosing the right batch effect control algorithm for bulk RNA-seq data meta-ana
10 months ago by Papyrus ★ 2.9k
1
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1
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1.1k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
10 months ago by Papyrus ★ 2.9k
1
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
10 months ago by Papyrus ★ 2.9k
1
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
10 months ago by Papyrus ★ 2.9k
0
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0
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357
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Comment: Comment: Suggestion for enrichment analysis for small microarray set.
10 months ago by Papyrus ★ 2.9k
1
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
10 months ago by Papyrus ★ 2.9k
1
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1
reply
1.1k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
10 months ago by Papyrus ★ 2.9k
1
vote
1
reply
1.1k
views
Answer: Answer: Obtain counts for specific genes with ChIP-seq data without peak calling
10 months ago by Papyrus ★ 2.9k
1
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1
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491
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Comment: Comment: Filtering content in heatmap to highest values
10 months ago by Papyrus ★ 2.9k
1
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2
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936
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Answer: Answer: Reorder GO terms using R
10 months ago by Papyrus ★ 2.9k
3
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1
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1.6k
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Comment: Comment: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
11 months ago by Papyrus ★ 2.9k
0
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0
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1.1k
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Comment: Comment: Splitting heatmap
11 months ago by Papyrus ★ 2.9k
0
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1
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1.1k
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Comment: Comment: Splitting heatmap
11 months ago by Papyrus ★ 2.9k
0
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1
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1.1k
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Comment: Comment: Splitting heatmap
11 months ago by Papyrus ★ 2.9k
1
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1
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1.1k
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Answer: Answer: scRNA-seq: How does cell number in clusters affect the number of DE genes?
12 months ago by Papyrus ★ 2.9k
0
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0
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467
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Comment: Comment: pipeline for correlation of RNASeq and Methylation data
12 months ago by Papyrus ★ 2.9k
2
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1
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925
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Comment: Comment: Testing overlap significance of three gene sets using the hypergeometric distrib
12 months ago by Papyrus ★ 2.9k
1
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0
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484
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Comment: Comment: DMRcaller Min. Reads per Cytosine
14 months ago by Papyrus ★ 2.9k
1
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0
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387
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Comment: Comment: linking methylation/SNPs to gene expression
14 months ago by Papyrus ★ 2.9k
0
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0
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1.5k
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Comment: Comment: How does enrichGO function calculated p-value?
14 months ago by Papyrus ★ 2.9k
0
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0
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1.2k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
14 months ago by Papyrus ★ 2.9k
0
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1
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1.2k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
14 months ago by Papyrus ★ 2.9k
323 results • Page 1 of 7
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