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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
2.4 years ago by Papyrus ★ 3.1k
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1
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1.8k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
2.4 years ago by Papyrus ★ 3.1k
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0
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681
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Comment: Comment: Suggestion for enrichment analysis for small microarray set.
2.4 years ago by Papyrus ★ 3.1k
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1.8k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
2.4 years ago by Papyrus ★ 3.1k
1
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1
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2.2k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
2.4 years ago by Papyrus ★ 3.1k
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1
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2.2k
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Answer: Answer: Obtain counts for specific genes with ChIP-seq data without peak calling
2.4 years ago by Papyrus ★ 3.1k
1
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1
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995
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Comment: Comment: Filtering content in heatmap to highest values
2.4 years ago by Papyrus ★ 3.1k
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2
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1.8k
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Answer: Answer: Reorder GO terms using R
2.4 years ago by Papyrus ★ 3.1k
3
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1
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3.3k
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Comment: Comment: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
2.5 years ago by Papyrus ★ 3.1k
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0
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1.8k
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Comment: Comment: Splitting heatmap
2.5 years ago by Papyrus ★ 3.1k
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1
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1.8k
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Comment: Comment: Splitting heatmap
2.5 years ago by Papyrus ★ 3.1k
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1
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1.8k
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Comment: Comment: Splitting heatmap
2.5 years ago by Papyrus ★ 3.1k
1
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1
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3.4k
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Answer: Answer: scRNA-seq: How does cell number in clusters affect the number of DE genes?
2.5 years ago by Papyrus ★ 3.1k
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0
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846
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Comment: Comment: pipeline for correlation of RNASeq and Methylation data
2.5 years ago by Papyrus ★ 3.1k
2
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1
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1.7k
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Comment: Comment: Testing overlap significance of three gene sets using the hypergeometric distrib
2.6 years ago by Papyrus ★ 3.1k
1
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0
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965
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Comment: Comment: DMRcaller Min. Reads per Cytosine
2.7 years ago by Papyrus ★ 3.1k
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0
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778
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Comment: Comment: linking methylation/SNPs to gene expression
2.7 years ago by Papyrus ★ 3.1k
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0
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3.5k
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Comment: Comment: How does enrichGO function calculated p-value?
2.7 years ago by Papyrus ★ 3.1k
0
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0
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2.4k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
2.7 years ago by Papyrus ★ 3.1k
0
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1
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2.4k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
2.7 years ago by Papyrus ★ 3.1k
2
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1
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2.4k
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Answer: Answer: Design and Contrast Matrix in Limma Analysis
2.7 years ago by Papyrus ★ 3.1k
1
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1
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3.7k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
2.8 years ago by Papyrus ★ 3.1k
0
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1
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3.7k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
2.8 years ago by Papyrus ★ 3.1k
3
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1
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3.7k
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Answer: Answer: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
2.8 years ago by Papyrus ★ 3.1k
0
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0
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1.9k
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Comment: Comment: Analysis of cell ranger ARC output data
2.8 years ago by Papyrus ★ 3.1k
4
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1
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11k
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Comment: Comment: Question on how to filter DESeq2 results correctly and use of the results functi
2.8 years ago by Papyrus ★ 3.1k
5
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1
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11k
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Answer: Answer: Question on how to filter DESeq2 results correctly and use of the results functi
2.8 years ago by Papyrus ★ 3.1k
1
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1
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10k
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Answer: Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
2.8 years ago by Papyrus ★ 3.1k
1
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0
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1.5k
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Comment: Comment: Animation of EnhancedVolcano?
2.9 years ago by Papyrus ★ 3.1k
1
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0
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1.2k
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
2.9 years ago by Papyrus ★ 3.1k
1
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1
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1.2k
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
2.9 years ago by Papyrus ★ 3.1k
0
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0
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2.1k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
2.9 years ago by Papyrus ★ 3.1k
1
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1
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2.1k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
2.9 years ago by Papyrus ★ 3.1k
1
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1
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2.1k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
3.0 years ago by Papyrus ★ 3.1k
4
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1
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4.0k
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Answer: Answer: GSEA with GO and KEGG datasets
3.0 years ago by Papyrus ★ 3.1k
2
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0
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4.1k
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Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
3.0 years ago by Papyrus ★ 3.1k
0
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1
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1.4k
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Comment: Comment: Issue with DESeq2 gene outlier detection when having multiple groups
3.1 years ago by Papyrus ★ 3.1k
1
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3
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1.4k
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Issue with DESeq2 gene outlier detection when having multiple groups
DESeq2 R RNA-seq
updated 3.1 years ago by 22k • written 3.1 years ago by ★ 3.1k
1
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1
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1.2k
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Answer: Answer: Why a gene in UCSC has different positions?
3.2 years ago by Papyrus ★ 3.1k
2
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1
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852
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Comment: Comment: differential expressed proteins cutoff threshold
3.2 years ago by Papyrus ★ 3.1k
1
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0
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1.1k
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Answer: Answer: Reads vs library size for DEA
3.3 years ago by Papyrus ★ 3.1k
1
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1
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1.4k
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Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
3.3 years ago by Papyrus ★ 3.1k
0
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2
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1.6k
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Comment: Comment: How to identify epigenetic complexes and transcription factors targeting list of
3.3 years ago by Papyrus ★ 3.1k
0
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0
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1.6k
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Comment: Comment: How to avoid overfitting using SVA?
3.4 years ago by Papyrus ★ 3.1k
0
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0
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1.4k
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Comment: Comment: WGBS data presentation
3.5 years ago by Papyrus ★ 3.1k
0
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1
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2.8k
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Comment: Comment: Cluster Profiler- enrichGO
3.5 years ago by Papyrus ★ 3.1k
1
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0
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2.0k
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Comment: Comment: ChIP-seq; investigate binding within region of tRNA genes
3.5 years ago by Papyrus ★ 3.1k
1
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1
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2.0k
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Comment: Comment: ChIP-seq; investigate binding within region of tRNA genes
3.5 years ago by Papyrus ★ 3.1k
0
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0
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966
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Comment: Comment: CpG Island Related
3.6 years ago by Papyrus ★ 3.1k
1
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0
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819
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Comment: Comment: Help finding normal samples for DNA methylation on the 450K platform
3.6 years ago by Papyrus ★ 3.1k
343 results • Page 2 of 7
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