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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
3.5 years ago by Papyrus ★ 3.1k
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1.7k
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Comment: Comment: My PCA plot looks good but i don't have differentially expressed genes
3.5 years ago by Papyrus ★ 3.1k
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1.2k
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Answer: Answer: About Per base sequence content: Should I cut the former abnormal 10 bp?
3.6 years ago by Papyrus ★ 3.1k
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1.0k
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Comment: Comment: from dexseq results to alternative splicing events identification
3.6 years ago by Papyrus ★ 3.1k
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811
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Comment: Comment: reference request: list of DNA methylation sites with consistent methylation lev
3.6 years ago by Papyrus ★ 3.1k
3
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1.7k
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Answer: Answer: TET2 Binding Motifs BED file
3.6 years ago by Papyrus ★ 3.1k
2
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1
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909
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Comment: Comment: find peaks over a set of genes
3.6 years ago by Papyrus ★ 3.1k
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1.1k
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Comment: Comment: How do I create a loop for each unique genes to subset the GRanges objects only
3.6 years ago by Papyrus ★ 3.1k
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3.0k
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Comment: Comment: Tips and tricks to improve data visualization in bioinformatics
3.6 years ago by Papyrus ★ 3.1k
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10
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3.0k
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7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 3.6 years ago by ★ 30k • written 3.6 years ago by ★ 3.1k
1
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1.5k
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Comment: Comment: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
3.6 years ago by Papyrus ★ 3.1k
1
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1
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2.5k
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Comment: Comment: Usefulness of hypergeometric test in pathway enrichment analysis
3.6 years ago by Papyrus ★ 3.1k
3
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1
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2.5k
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Answer: Answer: Usefulness of hypergeometric test in pathway enrichment analysis
3.6 years ago by Papyrus ★ 3.1k
0
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2.0k
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Comment: Comment: plot in r with count on y and dates on x axis
3.6 years ago by Papyrus ★ 3.1k
0
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1
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1.5k
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Answer: Answer: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
3.6 years ago by Papyrus ★ 3.1k
1
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1
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2.4k
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Comment: Comment: what are Differentially Expressed Genes?
3.7 years ago by Papyrus ★ 3.1k
4
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1
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2.4k
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Answer: Answer: what are Differentially Expressed Genes?
3.7 years ago by Papyrus ★ 3.1k
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0
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1.3k
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Answer: Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
3.7 years ago by Papyrus ★ 3.1k
1
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1
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1.9k
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Answer: Answer: calculate percentage of bases covered by the transcriptome
3.8 years ago by Papyrus ★ 3.1k
2
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0
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1.0k
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Comment: Comment: Is there any online or offline venn diagram tool which could run with more than
3.8 years ago by Papyrus ★ 3.1k
1
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1
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2.2k
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Comment: Comment: Using normalised counts for pairwise gene correlation (pearson) across samples
3.8 years ago by Papyrus ★ 3.1k
4
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1
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2.5k
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Answer: Answer: filtering most variable genes
3.8 years ago by Papyrus ★ 3.1k
3
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1
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2.2k
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Comment: Comment: RNA-Seq and qPCR
3.8 years ago by Papyrus ★ 3.1k
2
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1
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2.2k
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Comment: Comment: RNA-Seq and qPCR
3.8 years ago by Papyrus ★ 3.1k
3
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0
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2.2k
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Answer: Answer: RNA-Seq and qPCR
3.8 years ago by Papyrus ★ 3.1k
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0
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1.7k
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Comment: Comment: Noob question: how to combine counts and DESeq data into one CSV?
3.9 years ago by Papyrus ★ 3.1k
0
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0
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1.7k
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Answer: Answer: Noob question: how to combine counts and DESeq data into one CSV?
3.9 years ago by Papyrus ★ 3.1k
2
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1
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2.1k
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Answer: Answer: Heatmap for ChIP-seq data
3.9 years ago by Papyrus ★ 3.1k
0
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0
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1.5k
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Comment: Comment: DNA methylation batch effect remove
3.9 years ago by Papyrus ★ 3.1k
0
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1
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3.6k
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Comment: Comment: ChIP-seq heatmap input bed file
3.9 years ago by Papyrus ★ 3.1k
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0
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4.8k
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Comment: Comment: Batch effects prevention
3.9 years ago by Papyrus ★ 3.1k
3
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2
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3.6k
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Answer: Answer: ChIP-seq heatmap input bed file
3.9 years ago by Papyrus ★ 3.1k
0
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0
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2.2k
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Comment: Comment: Create custom annotation for Chinese hamster (Cricetulus griseus)
3.9 years ago by Papyrus ★ 3.1k
0
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1
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2.2k
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Comment: Comment: Create custom annotation for Chinese hamster (Cricetulus griseus)
3.9 years ago by Papyrus ★ 3.1k
0
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1
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2.2k
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Answer: Answer: Create custom annotation for Chinese hamster (Cricetulus griseus)
3.9 years ago by Papyrus ★ 3.1k
0
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1
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3.4k
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Answer: Answer: Problem in plotting graph or Graphics Device in the RStudio
3.9 years ago by Papyrus ★ 3.1k
0
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0
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1.6k
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Answer: Answer: How to do gene enrichment with locally stored KEGG & Reactome data in R
3.9 years ago by Papyrus ★ 3.1k
0
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0
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4.1k
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Comment: Comment: How to understand logics and statistical concepts behind limma package?
3.9 years ago by Papyrus ★ 3.1k
0
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0
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1.6k
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Comment: Comment: Why some CpGs start with "ch"
3.9 years ago by Papyrus ★ 3.1k
1
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1
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1.6k
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Answer: Answer: Why some CpGs start with "ch"
3.9 years ago by Papyrus ★ 3.1k
3
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0
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4.1k
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Answer: Answer: How to understand logics and statistical concepts behind limma package?
3.9 years ago by Papyrus ★ 3.1k
1
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0
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2.5k
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Comment: Comment: How to import a BED file to ChIPseeker in order to visualize genome coverage plo
3.9 years ago by Papyrus ★ 3.1k
3
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1
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2.5k
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Answer: Answer: How to import a BED file to ChIPseeker in order to visualize genome coverage plo
3.9 years ago by Papyrus ★ 3.1k
2
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0
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1.2k
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Comment: Comment: Finding regulatory elements for coexpressed genes
4.0 years ago by Papyrus ★ 3.1k
2
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0
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5.2k
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Comment: Comment: Enrichr input genes, up, down, or both at once
4.0 years ago by Papyrus ★ 3.1k
0
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0
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1.0k
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Answer: Answer: Filtering of RNA-seq data
4.0 years ago by Papyrus ★ 3.1k
3
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2.0k
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Answer: Answer: proteomics data analysis and non-normality distribution
4.0 years ago by Papyrus ★ 3.1k
0
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0
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3.0k
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Comment: Comment: Color layer in ggplot (Volcano plot)
4.0 years ago by Papyrus ★ 3.1k
1
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1
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8.1k
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Comment: Comment: RNA-seq z-score normalization
4.0 years ago by Papyrus ★ 3.1k
2
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0
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1.2k
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Answer: Answer: how to get the file of CG sites correspond to gene about Infinium MethylationEPI
4.0 years ago by Papyrus ★ 3.1k
343 results • Page 3 of 7
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