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Answer: Answer: representing PCs as marginal distribution on x and Y acis
7 weeks ago by Papyrus ★ 2.9k
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2
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455
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Answer: Answer: Tutorial for analyzing WGBS data
7 weeks ago by Papyrus ★ 2.9k
2
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1
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387
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Answer: Answer: Do people use M-value in WGBS?
4 months ago by Papyrus ★ 2.9k
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0
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631
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Answer: Answer: IDAT or Txt MINFI or LIMMA?
8 months ago by Papyrus ★ 2.9k
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0
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951
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
9 months ago by Papyrus ★ 2.9k
2
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1
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800
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Answer: Answer: count number of GC for a given genomic ranges
9 months ago by Papyrus ★ 2.9k
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1
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783
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Answer: Answer: DMR Analysis for RRBS: what annotation file to I use?
9 months ago by Papyrus ★ 2.9k
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0
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973
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Answer: Answer: How to perfrom a statistical test on a 3-way Venn Diagram
9 months ago by Papyrus ★ 2.9k
2
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1
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1.2k
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Answer: Answer: Gene Set Comparison Without Expression Data
10 months ago by Papyrus ★ 2.9k
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1
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776
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Answer: Answer: Boxplot of contrasts and genes together
10 months ago by Papyrus ★ 2.9k
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1
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1.1k
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Answer: Answer: Obtain counts for specific genes with ChIP-seq data without peak calling
10 months ago by Papyrus ★ 2.9k
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2
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954
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Answer: Answer: Reorder GO terms using R
11 months ago by Papyrus ★ 2.9k
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1
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1.1k
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Answer: Answer: scRNA-seq: How does cell number in clusters affect the number of DE genes?
12 months ago by Papyrus ★ 2.9k
2
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1
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1.2k
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Answer: Answer: Design and Contrast Matrix in Limma Analysis
14 months ago by Papyrus ★ 2.9k
3
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1
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1.7k
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Answer: Answer: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Papyrus ★ 2.9k
4
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1
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3.9k
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Answer: Answer: Question on how to filter DESeq2 results correctly and use of the results functi
15 months ago by Papyrus ★ 2.9k
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1
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4.8k
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Answer: Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
16 months ago by Papyrus ★ 2.9k
3
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1
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1.5k
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Answer: Answer: GSEA with GO and KEGG datasets
17 months ago by Papyrus ★ 2.9k
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1
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694
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Answer: Answer: Why a gene in UCSC has different positions?
21 months ago by Papyrus ★ 2.9k
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0
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545
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Answer: Answer: Reads vs library size for DEA
21 months ago by Papyrus ★ 2.9k
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1
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775
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Answer: Answer: About Per base sequence content: Should I cut the former abnormal 10 bp?
2.2 years ago by Papyrus ★ 2.9k
3
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0
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1.0k
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Answer: Answer: TET2 Binding Motifs BED file
2.2 years ago by Papyrus ★ 2.9k
3
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1
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1.1k
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Answer: Answer: Usefulness of hypergeometric test in pathway enrichment analysis
2.3 years ago by Papyrus ★ 2.9k
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1
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1.0k
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Answer: Answer: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
2.3 years ago by Papyrus ★ 2.9k
4
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1
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1.5k
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Answer: Answer: what are Differentially Expressed Genes?
2.4 years ago by Papyrus ★ 2.9k
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0
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891
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Answer: Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
2.4 years ago by Papyrus ★ 2.9k
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1
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1.3k
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Answer: Answer: calculate percentage of bases covered by the transcriptome
2.4 years ago by Papyrus ★ 2.9k
4
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1
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1.6k
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Answer: Answer: filtering most variable genes
2.5 years ago by Papyrus ★ 2.9k
3
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0
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1.5k
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Answer: Answer: RNA-Seq and qPCR
2.5 years ago by Papyrus ★ 2.9k
0
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0
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1.1k
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Answer: Answer: Noob question: how to combine counts and DESeq data into one CSV?
2.5 years ago by Papyrus ★ 2.9k
2
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1
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1.3k
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Answer: Answer: Heatmap for ChIP-seq data
2.5 years ago by Papyrus ★ 2.9k
3
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2
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2.4k
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Answer: Answer: ChIP-seq heatmap input bed file
2.5 years ago by Papyrus ★ 2.9k
0
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1
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1.5k
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Answer: Answer: Create custom annotation for Chinese hamster (Cricetulus griseus)
2.5 years ago by Papyrus ★ 2.9k
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1
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2.3k
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Answer: Answer: Problem in plotting graph or Graphics Device in the RStudio
2.5 years ago by Papyrus ★ 2.9k
0
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0
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897
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Answer: Answer: How to do gene enrichment with locally stored KEGG & Reactome data in R
2.5 years ago by Papyrus ★ 2.9k
1
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1
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1.1k
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Answer: Answer: Why some CpGs start with "ch"
2.5 years ago by Papyrus ★ 2.9k
2
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0
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2.1k
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Answer: Answer: How to understand logics and statistical concepts behind limma package?
2.5 years ago by Papyrus ★ 2.9k
3
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1
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1.8k
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Answer: Answer: How to import a BED file to ChIPseeker in order to visualize genome coverage plo
2.6 years ago by Papyrus ★ 2.9k
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0
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771
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Answer: Answer: Filtering of RNA-seq data
2.6 years ago by Papyrus ★ 2.9k
3
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0
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1.4k
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Answer: Answer: proteomics data analysis and non-normality distribution
2.6 years ago by Papyrus ★ 2.9k
2
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0
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823
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Answer: Answer: how to get the file of CG sites correspond to gene about Infinium MethylationEPI
2.6 years ago by Papyrus ★ 2.9k
0
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0
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1.3k
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Answer: Answer: Pick Random regions inside genes
2.6 years ago by Papyrus ★ 2.9k
2
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0
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867
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Answer: Answer: Per base sequence Quality in Fast QC report
2.6 years ago by Papyrus ★ 2.9k
1
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0
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1.7k
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Answer: Answer: Database for Enhancers with Coordinates
2.6 years ago by Papyrus ★ 2.9k
2
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1
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747
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Answer: Answer: Batch Correction While Batch Numbers and Labels Match
2.7 years ago by Papyrus ★ 2.9k
1
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0
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4.0k
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Answer: Answer: Changing colour labels of samples with pheatmap
2.7 years ago by Papyrus ★ 2.9k
1
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2
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1.8k
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Answer: Answer: how to combine either Rna-seq datasets or results from analysis of Rna-seq datas
2.7 years ago by Papyrus ★ 2.9k
3
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0
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941
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Answer: Answer: adjusting for confounding factors in Spearman correlation?
2.7 years ago by Papyrus ★ 2.9k
2
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1
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1.2k
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Answer: Answer: How to plot/combine biological replicates on a genomic features plot for methyla
2.8 years ago by Papyrus ★ 2.9k
3
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1
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1.1k
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Answer: Answer: What cut-offs to use for Genomic Features Pie Chart for Methylation Array Data?
2.8 years ago by Papyrus ★ 2.9k
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