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Comment: Comment: DESeq: too low p-value for RNAseq
4 weeks ago by Papyrus ★ 2.9k
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435
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Comment: Comment: DESeq: too low p-value for RNAseq
4 weeks ago by Papyrus ★ 2.9k
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384
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Comment: Comment: representing PCs as marginal distribution on x and Y acis
7 weeks ago by Papyrus ★ 2.9k
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805
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
10 weeks ago by Papyrus ★ 2.9k
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2
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805
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
10 weeks ago by Papyrus ★ 2.9k
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611
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Comment: Comment: 4 Fastq files for a single run generated by 10X
5 months ago by Papyrus ★ 2.9k
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377
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Comment: Comment: Fisher exact test on different gene sets
6 months ago by Papyrus ★ 2.9k
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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512
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Comment: Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s
9 months ago by Papyrus ★ 2.9k
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528
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Comment: Comment: Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq da
9 months ago by Papyrus ★ 2.9k
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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3.0k
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Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
9 months ago by Papyrus ★ 2.9k
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1.2k
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Comment: Comment: Gene Set Comparison Without Expression Data
10 months ago by Papyrus ★ 2.9k
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776
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Comment: Comment: Boxplot of contrasts and genes together
10 months ago by Papyrus ★ 2.9k
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1
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877
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Comment: Comment: Blacklist for bacterial genome [ChIPseq]?
10 months ago by Papyrus ★ 2.9k
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495
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Comment: Comment: Choosing the right batch effect control algorithm for bulk RNA-seq data meta-ana
10 months ago by Papyrus ★ 2.9k
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1.1k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
10 months ago by Papyrus ★ 2.9k
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
10 months ago by Papyrus ★ 2.9k
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
10 months ago by Papyrus ★ 2.9k
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362
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Comment: Comment: Suggestion for enrichment analysis for small microarray set.
10 months ago by Papyrus ★ 2.9k
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
10 months ago by Papyrus ★ 2.9k
1
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1
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1.1k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
10 months ago by Papyrus ★ 2.9k
1
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1
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500
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Comment: Comment: Filtering content in heatmap to highest values
11 months ago by Papyrus ★ 2.9k
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1
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1.7k
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Comment: Comment: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
11 months ago by Papyrus ★ 2.9k
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1.1k
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Comment: Comment: Splitting heatmap
12 months ago by Papyrus ★ 2.9k
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1
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1.1k
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Comment: Comment: Splitting heatmap
12 months ago by Papyrus ★ 2.9k
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1
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1.1k
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Comment: Comment: Splitting heatmap
12 months ago by Papyrus ★ 2.9k
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0
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479
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Comment: Comment: pipeline for correlation of RNASeq and Methylation data
12 months ago by Papyrus ★ 2.9k
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1
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938
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Comment: Comment: Testing overlap significance of three gene sets using the hypergeometric distrib
13 months ago by Papyrus ★ 2.9k
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490
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Comment: Comment: DMRcaller Min. Reads per Cytosine
14 months ago by Papyrus ★ 2.9k
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394
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Comment: Comment: linking methylation/SNPs to gene expression
14 months ago by Papyrus ★ 2.9k
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1.5k
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Comment: Comment: How does enrichGO function calculated p-value?
14 months ago by Papyrus ★ 2.9k
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1.2k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
14 months ago by Papyrus ★ 2.9k
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1
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1.2k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
14 months ago by Papyrus ★ 2.9k
1
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1
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1.7k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Papyrus ★ 2.9k
0
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1
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1.7k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Papyrus ★ 2.9k
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0
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1.1k
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Comment: Comment: Analysis of cell ranger ARC output data
15 months ago by Papyrus ★ 2.9k
2
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1
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3.9k
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Comment: Comment: Question on how to filter DESeq2 results correctly and use of the results functi
15 months ago by Papyrus ★ 2.9k
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0
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915
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Comment: Comment: Animation of EnhancedVolcano?
17 months ago by Papyrus ★ 2.9k
1
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0
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630
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
17 months ago by Papyrus ★ 2.9k
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1
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630
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
17 months ago by Papyrus ★ 2.9k
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0
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1.2k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
17 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
17 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
17 months ago by Papyrus ★ 2.9k
2
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2.1k
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Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
18 months ago by Papyrus ★ 2.9k
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1
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822
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Comment: Comment: Issue with DESeq2 gene outlier detection when having multiple groups
19 months ago by Papyrus ★ 2.9k
2
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1
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493
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Comment: Comment: differential expressed proteins cutoff threshold
21 months ago by Papyrus ★ 2.9k
1
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1
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818
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Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
21 months ago by Papyrus ★ 2.9k
222 results • Page 1 of 5
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