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Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
21 months ago by Papyrus ★ 2.9k
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2
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953
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Comment: Comment: How to identify epigenetic complexes and transcription factors targeting list of
22 months ago by Papyrus ★ 2.9k
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0
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1.1k
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Comment: Comment: How to avoid overfitting using SVA?
23 months ago by Papyrus ★ 2.9k
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0
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854
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Comment: Comment: WGBS data presentation
2.0 years ago by Papyrus ★ 2.9k
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1
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2.0k
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Comment: Comment: Cluster Profiler- enrichGO
2.0 years ago by Papyrus ★ 2.9k
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0
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1.2k
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Comment: Comment: ChIP-seq; investigate binding within region of tRNA genes
2.1 years ago by Papyrus ★ 2.9k
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1
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1.2k
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Comment: Comment: ChIP-seq; investigate binding within region of tRNA genes
2.1 years ago by Papyrus ★ 2.9k
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0
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549
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Comment: Comment: CpG Island Related
2.1 years ago by Papyrus ★ 2.9k
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0
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511
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Comment: Comment: Help finding normal samples for DNA methylation on the 450K platform
2.2 years ago by Papyrus ★ 2.9k
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0
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4.8k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
2.2 years ago by Papyrus ★ 2.9k
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994
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Comment: Comment: My PCA plot looks good but i don't have differentially expressed genes
2.2 years ago by Papyrus ★ 2.9k
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1
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576
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Comment: Comment: from dexseq results to alternative splicing events identification
2.2 years ago by Papyrus ★ 2.9k
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0
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614
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Comment: Comment: reference request: list of DNA methylation sites with consistent methylation lev
2.2 years ago by Papyrus ★ 2.9k
2
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1
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606
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Comment: Comment: find peaks over a set of genes
2.2 years ago by Papyrus ★ 2.9k
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0
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843
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Comment: Comment: How do I create a loop for each unique genes to subset the GRanges objects only
2.3 years ago by Papyrus ★ 2.9k
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0
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2.0k
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Comment: Comment: Tips and tricks to improve data visualization in bioinformatics
2.3 years ago by Papyrus ★ 2.9k
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0
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1.0k
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Comment: Comment: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
2.3 years ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Usefulness of hypergeometric test in pathway enrichment analysis
2.3 years ago by Papyrus ★ 2.9k
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0
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1.5k
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Comment: Comment: plot in r with count on y and dates on x axis
2.3 years ago by Papyrus ★ 2.9k
1
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1
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1.5k
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Comment: Comment: what are Differentially Expressed Genes?
2.4 years ago by Papyrus ★ 2.9k
2
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0
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747
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Comment: Comment: Is there any online or offline venn diagram tool which could run with more than
2.5 years ago by Papyrus ★ 2.9k
1
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1
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1.5k
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Comment: Comment: Using normalised counts for pairwise gene correlation (pearson) across samples
2.5 years ago by Papyrus ★ 2.9k
3
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1
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1.5k
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Comment: Comment: RNA-Seq and qPCR
2.5 years ago by Papyrus ★ 2.9k
2
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1
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1.5k
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Comment: Comment: RNA-Seq and qPCR
2.5 years ago by Papyrus ★ 2.9k
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0
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1.2k
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Comment: Comment: Noob question: how to combine counts and DESeq data into one CSV?
2.5 years ago by Papyrus ★ 2.9k
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0
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1.0k
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Comment: Comment: DNA methylation batch effect remove
2.5 years ago by Papyrus ★ 2.9k
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1
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2.4k
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Comment: Comment: ChIP-seq heatmap input bed file
2.5 years ago by Papyrus ★ 2.9k
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0
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3.1k
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Comment: Comment: Batch effects prevention
2.5 years ago by Papyrus ★ 2.9k
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0
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1.5k
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Comment: Comment: Create custom annotation for Chinese hamster (Cricetulus griseus)
2.6 years ago by Papyrus ★ 2.9k
0
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1
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1.5k
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Comment: Comment: Create custom annotation for Chinese hamster (Cricetulus griseus)
2.6 years ago by Papyrus ★ 2.9k
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0
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2.2k
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Comment: Comment: How to understand logics and statistical concepts behind limma package?
2.6 years ago by Papyrus ★ 2.9k
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0
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1.1k
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Comment: Comment: Why some CpGs start with "ch"
2.6 years ago by Papyrus ★ 2.9k
1
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0
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1.8k
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Comment: Comment: How to import a BED file to ChIPseeker in order to visualize genome coverage plo
2.6 years ago by Papyrus ★ 2.9k
2
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0
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843
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Comment: Comment: Finding regulatory elements for coexpressed genes
2.6 years ago by Papyrus ★ 2.9k
2
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0
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3.0k
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Comment: Comment: Enrichr input genes, up, down, or both at once
2.6 years ago by Papyrus ★ 2.9k
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0
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2.2k
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Comment: Comment: Color layer in ggplot (Volcano plot)
2.6 years ago by Papyrus ★ 2.9k
1
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1
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5.1k
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Comment: Comment: RNA-seq z-score normalization
2.6 years ago by Papyrus ★ 2.9k
1
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1
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2.2k
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Comment: Comment: How to use MACS2 output for DESEQ2 differential analysis during ATAC-seq? How to
2.6 years ago by Papyrus ★ 2.9k
1
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1
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697
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Comment: Comment: microarray dataset input into metascape
2.7 years ago by Papyrus ★ 2.9k
1
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1
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1.3k
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Comment: Comment: Row names and probe names does not match in topTable output
2.7 years ago by Papyrus ★ 2.9k
0
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1
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1.3k
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Comment: Comment: Row names and probe names does not match in topTable output
2.7 years ago by Papyrus ★ 2.9k
1
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0
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974
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Comment: Comment: RRBS data analysis using Bismark and methylkit
2.7 years ago by Papyrus ★ 2.9k
1
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0
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3.8k
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Comment: Comment: Difference in Bismark output methylation call files and coverage files
2.7 years ago by Papyrus ★ 2.9k
1
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1
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2.0k
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Comment: Comment: Methylkit (differential methylation analysis) error in data frame
2.7 years ago by Papyrus ★ 2.9k
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0
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2.0k
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Comment: Comment: Methylkit (differential methylation analysis) error in data frame
2.7 years ago by Papyrus ★ 2.9k
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0
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2.0k
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Comment: Comment: Methylkit (differential methylation analysis) error in data frame
2.7 years ago by Papyrus ★ 2.9k
0
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0
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2.0k
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Comment: Comment: Cluster Profiler- enrichGO
2.7 years ago by Papyrus ★ 2.9k
0
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1
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2.0k
views
Comment: Comment: Cluster Profiler- enrichGO
2.7 years ago by Papyrus ★ 2.9k
1
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1
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960
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Comment: Comment: methylation beta distribution (minfi generated)
2.7 years ago by Papyrus ★ 2.9k
0
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1
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1.9k
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Comment: Comment: how to combine either Rna-seq datasets or results from analysis of Rna-seq datas
2.7 years ago by Papyrus ★ 2.9k
223 results • Page 2 of 5
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