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2
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1.2k
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Answer: Answer: Design and Contrast Matrix in Limma Analysis
14 months ago by Papyrus ★ 2.9k
1
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1
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1.7k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Papyrus ★ 2.9k
0
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1
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1.7k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Papyrus ★ 2.9k
3
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1
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1.7k
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Answer: Answer: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Papyrus ★ 2.9k
0
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0
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1.1k
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Comment: Comment: Analysis of cell ranger ARC output data
15 months ago by Papyrus ★ 2.9k
2
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1
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3.9k
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Comment: Comment: Question on how to filter DESeq2 results correctly and use of the results functi
15 months ago by Papyrus ★ 2.9k
4
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1
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3.9k
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Answer: Answer: Question on how to filter DESeq2 results correctly and use of the results functi
15 months ago by Papyrus ★ 2.9k
1
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1
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4.8k
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Answer: Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
15 months ago by Papyrus ★ 2.9k
1
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0
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915
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Comment: Comment: Animation of EnhancedVolcano?
17 months ago by Papyrus ★ 2.9k
1
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0
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630
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
17 months ago by Papyrus ★ 2.9k
1
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1
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630
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
17 months ago by Papyrus ★ 2.9k
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0
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1.2k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
17 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
17 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
17 months ago by Papyrus ★ 2.9k
3
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1
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1.5k
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Answer: Answer: GSEA with GO and KEGG datasets
17 months ago by Papyrus ★ 2.9k
2
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0
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2.1k
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Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
18 months ago by Papyrus ★ 2.9k
0
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1
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820
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Comment: Comment: Issue with DESeq2 gene outlier detection when having multiple groups
19 months ago by Papyrus ★ 2.9k
1
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3
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820
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Issue with DESeq2 gene outlier detection when having multiple groups
DESeq2 R RNA-seq
updated 19 months ago by 19k • written 19 months ago by ★ 2.9k
1
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1
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694
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Answer: Answer: Why a gene in UCSC has different positions?
21 months ago by Papyrus ★ 2.9k
2
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1
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493
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Comment: Comment: differential expressed proteins cutoff threshold
21 months ago by Papyrus ★ 2.9k
1
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0
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545
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Answer: Answer: Reads vs library size for DEA
21 months ago by Papyrus ★ 2.9k
1
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1
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818
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Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
21 months ago by Papyrus ★ 2.9k
0
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2
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944
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Comment: Comment: How to identify epigenetic complexes and transcription factors targeting list of
22 months ago by Papyrus ★ 2.9k
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0
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1.1k
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Comment: Comment: How to avoid overfitting using SVA?
22 months ago by Papyrus ★ 2.9k
0
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0
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843
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Comment: Comment: WGBS data presentation
23 months ago by Papyrus ★ 2.9k
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1
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1.9k
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Comment: Comment: Cluster Profiler- enrichGO
24 months ago by Papyrus ★ 2.9k
1
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0
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1.1k
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Comment: Comment: ChIP-seq; investigate binding within region of tRNA genes
2.0 years ago by Papyrus ★ 2.9k
1
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1
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1.1k
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Comment: Comment: ChIP-seq; investigate binding within region of tRNA genes
2.0 years ago by Papyrus ★ 2.9k
0
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0
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545
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Comment: Comment: CpG Island Related
2.1 years ago by Papyrus ★ 2.9k
1
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0
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510
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Comment: Comment: Help finding normal samples for DNA methylation on the 450K platform
2.1 years ago by Papyrus ★ 2.9k
0
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0
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4.7k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
2.1 years ago by Papyrus ★ 2.9k
5
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984
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Comment: Comment: My PCA plot looks good but i don't have differentially expressed genes
2.1 years ago by Papyrus ★ 2.9k
0
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1
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775
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Answer: Answer: About Per base sequence content: Should I cut the former abnormal 10 bp?
2.2 years ago by Papyrus ★ 2.9k
0
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1
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566
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Comment: Comment: from dexseq results to alternative splicing events identification
2.2 years ago by Papyrus ★ 2.9k
1
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0
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610
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Comment: Comment: reference request: list of DNA methylation sites with consistent methylation lev
2.2 years ago by Papyrus ★ 2.9k
3
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0
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1.0k
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Answer: Answer: TET2 Binding Motifs BED file
2.2 years ago by Papyrus ★ 2.9k
2
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1
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602
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Comment: Comment: find peaks over a set of genes
2.2 years ago by Papyrus ★ 2.9k
0
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0
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839
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Comment: Comment: How do I create a loop for each unique genes to subset the GRanges objects only
2.2 years ago by Papyrus ★ 2.9k
0
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0
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2.0k
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Comment: Comment: Tips and tricks to improve data visualization in bioinformatics
2.2 years ago by Papyrus ★ 2.9k
15
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10
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2.0k
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7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 2.2 years ago by ★ 27k • written 2.2 years ago by ★ 2.9k
1
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0
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1.0k
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Comment: Comment: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
2.2 years ago by Papyrus ★ 2.9k
1
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1
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1.1k
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Comment: Comment: Usefulness of hypergeometric test in pathway enrichment analysis
2.3 years ago by Papyrus ★ 2.9k
3
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1
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1.1k
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Answer: Answer: Usefulness of hypergeometric test in pathway enrichment analysis
2.3 years ago by Papyrus ★ 2.9k
0
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0
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1.5k
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Comment: Comment: plot in r with count on y and dates on x axis
2.3 years ago by Papyrus ★ 2.9k
0
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1
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1.0k
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Answer: Answer: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
2.3 years ago by Papyrus ★ 2.9k
1
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1
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1.5k
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Comment: Comment: what are Differentially Expressed Genes?
2.4 years ago by Papyrus ★ 2.9k
4
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1
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1.5k
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Answer: Answer: what are Differentially Expressed Genes?
2.4 years ago by Papyrus ★ 2.9k
0
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0
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891
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Answer: Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
2.4 years ago by Papyrus ★ 2.9k
1
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1
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1.3k
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Answer: Answer: calculate percentage of bases covered by the transcriptome
2.4 years ago by Papyrus ★ 2.9k
2
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0
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738
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Comment: Comment: Is there any online or offline venn diagram tool which could run with more than
2.4 years ago by Papyrus ★ 2.9k
323 results • Page 2 of 7
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