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1.6k
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Comment:
Comment: How does enrichGO function calculated p-value?
15 months ago by
Papyrus
★ 2.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: Design and Contrast Matrix in Limma Analysis
15 months ago by
Papyrus
★ 2.9k
0
votes
1
reply
1.3k
views
Comment:
Comment: Design and Contrast Matrix in Limma Analysis
15 months ago by
Papyrus
★ 2.9k
2
votes
1
reply
1.3k
views
Answer:
Answer: Design and Contrast Matrix in Limma Analysis
15 months ago by
Papyrus
★ 2.9k
1
vote
1
reply
1.7k
views
Comment:
Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by
Papyrus
★ 2.9k
0
votes
1
reply
1.7k
views
Comment:
Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by
Papyrus
★ 2.9k
3
votes
1
reply
1.7k
views
Answer:
Answer: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by
Papyrus
★ 2.9k
0
votes
0
replies
1.1k
views
Comment:
Comment: Analysis of cell ranger ARC output data
16 months ago by
Papyrus
★ 2.9k
2
votes
1
reply
4.0k
views
Comment:
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
16 months ago by
Papyrus
★ 2.9k
4
votes
1
reply
4.0k
views
Answer:
Answer: Question on how to filter DESeq2 results correctly and use of the results functi
16 months ago by
Papyrus
★ 2.9k
1
vote
1
reply
4.9k
views
Answer:
Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
16 months ago by
Papyrus
★ 2.9k
1
vote
0
replies
922
views
Comment:
Comment: Animation of EnhancedVolcano?
18 months ago by
Papyrus
★ 2.9k
1
vote
0
replies
643
views
Comment:
Comment: Resource for Enhancers for the gene X in different tissues
18 months ago by
Papyrus
★ 2.9k
1
vote
1
reply
643
views
Comment:
Comment: Resource for Enhancers for the gene X in different tissues
18 months ago by
Papyrus
★ 2.9k
0
votes
0
replies
1.2k
views
Comment:
Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
18 months ago by
Papyrus
★ 2.9k
1
vote
1
reply
1.2k
views
Comment:
Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
18 months ago by
Papyrus
★ 2.9k
1
vote
1
reply
1.2k
views
Comment:
Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
18 months ago by
Papyrus
★ 2.9k
3
votes
1
reply
1.6k
views
Answer:
Answer: GSEA with GO and KEGG datasets
18 months ago by
Papyrus
★ 2.9k
2
votes
0
replies
2.2k
views
Comment:
Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
18 months ago by
Papyrus
★ 2.9k
0
votes
1
reply
831
views
Comment:
Comment: Issue with DESeq2 gene outlier detection when having multiple groups
20 months ago by
Papyrus
★ 2.9k
1
vote
3
replies
831
views
Issue with DESeq2 gene outlier detection when having multiple groups
DESeq2
R
RNA-seq
updated 20 months ago by
i.sudbery
19k • written 20 months ago by
Papyrus
★ 2.9k
1
vote
1
reply
712
views
Answer:
Answer: Why a gene in UCSC has different positions?
21 months ago by
Papyrus
★ 2.9k
2
votes
1
reply
499
views
Comment:
Comment: differential expressed proteins cutoff threshold
21 months ago by
Papyrus
★ 2.9k
1
vote
0
replies
560
views
Answer:
Answer: Reads vs library size for DEA
21 months ago by
Papyrus
★ 2.9k
1
vote
1
reply
837
views
Comment:
Comment: What type of normalization does removeBatchEffect function require as the input?
21 months ago by
Papyrus
★ 2.9k
0
votes
2
replies
954
views
Comment:
Comment: How to identify epigenetic complexes and transcription factors targeting list of
22 months ago by
Papyrus
★ 2.9k
0
votes
0
replies
1.1k
views
Comment:
Comment: How to avoid overfitting using SVA?
23 months ago by
Papyrus
★ 2.9k
0
votes
0
replies
854
views
Comment:
Comment: WGBS data presentation
2.0 years ago by
Papyrus
★ 2.9k
0
votes
1
reply
2.0k
views
Comment:
Comment: Cluster Profiler- enrichGO
2.0 years ago by
Papyrus
★ 2.9k
1
vote
0
replies
1.2k
views
Comment:
Comment: ChIP-seq; investigate binding within region of tRNA genes
2.1 years ago by
Papyrus
★ 2.9k
1
vote
1
reply
1.2k
views
Comment:
Comment: ChIP-seq; investigate binding within region of tRNA genes
2.1 years ago by
Papyrus
★ 2.9k
0
votes
0
replies
550
views
Comment:
Comment: CpG Island Related
2.1 years ago by
Papyrus
★ 2.9k
1
vote
0
replies
511
views
Comment:
Comment: Help finding normal samples for DNA methylation on the 450K platform
2.2 years ago by
Papyrus
★ 2.9k
0
votes
0
replies
4.8k
views
Comment:
Comment: Methodological problems are extremely common for enrichment analysis - beware th
2.2 years ago by
Papyrus
★ 2.9k
5
votes
0
replies
994
views
Comment:
Comment: My PCA plot looks good but i don't have differentially expressed genes
2.2 years ago by
Papyrus
★ 2.9k
0
votes
1
reply
783
views
Answer:
Answer: About Per base sequence content: Should I cut the former abnormal 10 bp?
2.2 years ago by
Papyrus
★ 2.9k
0
votes
1
reply
576
views
Comment:
Comment: from dexseq results to alternative splicing events identification
2.2 years ago by
Papyrus
★ 2.9k
1
vote
0
replies
614
views
Comment:
Comment: reference request: list of DNA methylation sites with consistent methylation lev
2.2 years ago by
Papyrus
★ 2.9k
3
votes
0
replies
1.0k
views
Answer:
Answer: TET2 Binding Motifs BED file
2.2 years ago by
Papyrus
★ 2.9k
2
votes
1
reply
606
views
Comment:
Comment: find peaks over a set of genes
2.2 years ago by
Papyrus
★ 2.9k
0
votes
0
replies
843
views
Comment:
Comment: How do I create a loop for each unique genes to subset the GRanges objects only
2.3 years ago by
Papyrus
★ 2.9k
0
votes
0
replies
2.0k
views
Comment:
Comment: Tips and tricks to improve data visualization in bioinformatics
2.3 years ago by
Papyrus
★ 2.9k
15
votes
10
replies
2.0k
views
7 follow
Forum:
Tips and tricks to improve data visualization in bioinformatics
visualization
ggplot2
plot
updated 2.3 years ago by
Mensur Dlakic
★ 27k • written 2.3 years ago by
Papyrus
★ 2.9k
1
vote
0
replies
1.0k
views
Comment:
Comment: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
2.3 years ago by
Papyrus
★ 2.9k
1
vote
1
reply
1.2k
views
Comment:
Comment: Usefulness of hypergeometric test in pathway enrichment analysis
2.3 years ago by
Papyrus
★ 2.9k
3
votes
1
reply
1.2k
views
Answer:
Answer: Usefulness of hypergeometric test in pathway enrichment analysis
2.3 years ago by
Papyrus
★ 2.9k
0
votes
0
replies
1.5k
views
Comment:
Comment: plot in r with count on y and dates on x axis
2.3 years ago by
Papyrus
★ 2.9k
0
votes
1
reply
1.0k
views
Answer:
Answer: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
2.3 years ago by
Papyrus
★ 2.9k
1
vote
1
reply
1.5k
views
Comment:
Comment: what are Differentially Expressed Genes?
2.4 years ago by
Papyrus
★ 2.9k
4
votes
1
reply
1.5k
views
Answer:
Answer: what are Differentially Expressed Genes?
2.4 years ago by
Papyrus
★ 2.9k
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