User: Chen
Chen • 760
- Reputation:
- 760
- Status:
- Trusted
- Location:
- Last seen:
- 4 weeks, 1 day ago
- Joined:
- 6 years, 4 months ago
- Email:
- b********@gmail.com
Computer Science Ph.D.
Fan of Istvan Albert
Research Area: Bioinformatics, Algorithms, Machine Learning
Posts by Chen
<prev
• 100 results •
page 1 of 10 •
next >
0
votes
2
answers
327
views
2
answers
... By contributing, I mean writing software or applications ...
written 5 weeks ago by
Chen • 760
8
votes
2
answers
327
views
8 follow
2
answers
... I got my Ph.D. in Computer Science with research directions of bioinformatics and computational biology.
I published several first-author papers in journal Bioinformatics and conferences like RECOMB.
I also have a Master degree in Genomics.
Now I am a full-time Software Engineer in Silicon Valley, ...
1
vote
3
answers
1.0k
views
3
answers
... Here is 300x coverage NGS reads for human in FASTQ file format: ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/ ...
written 5 weeks ago by
Chen • 760
2
votes
1
answer
272
views
1
answer
... Previously people suggest me to put my tool into Galaxy, now people suggest me to put my tool into Bioconda.
After spending more than one day to put my recent tool into Bioconda, I am wondering does anyone know their differences? Which one is better to make your tool more accessible?
Thanks! ...
written 3 months ago by
Chen • 760
• updated
3 months ago by
Friederike • 2.3k
0
votes
0
answers
175
views
0
answers
... I agree, and thank you for the information. I will double think before I ask next time. Please delete if possible. ...
written 7 months ago by
Chen • 760
0
votes
0
answers
175
views
0
answers
... Can SNP arrays such as Affymetrix genome-wide SNP array 6.0 handle clustered SNPs.
By clustered SNPs I mean SNPs that are very close to each other, for instance, SNPs that are closer than 10 bp? ...
written 8 months ago by
Chen • 760
0
votes
0
answers
152
views
0
answers
Comment:
C: RNA-Seq Variant Calling
... Can you share the command lines you used? ...
written 8 months ago by
Chen • 760
0
votes
0
answers
1.3k
views
0
answers
... Hi swimmer, thank you very much for the suggestions. Do you think https://gencore.bio.nyu.edu/variant-calling-pipeline/ is a good command pipeline that I can follow? This is the kind of pipeline I am looking for, but I am not sure if they miss something important. ...
written 8 months ago by
Chen • 760
6
votes
0
answers
1.3k
views
9 follow
0
answers
... With full respect, GATK is a good tool for SNP calling.
But the tutorial on GATK website is too complex, I get lost in the details.
Is there an easy to use a list of GATK commands for SNP calling? That I can copy and paste, with changing of just input file names, and maybe few parameters? ...
written 8 months ago by
Chen • 760
0
votes
5
answers
8.3k
views
5
answers
... is the database 0-based or 1 based? ...
written 8 months ago by
Chen • 760
Latest awards to Chen
Good Question
10 weeks ago,
asked a question that was upvoted at least 5 times.
For Which Bioinformatics Tools Are Written In Python
Teacher
10 weeks ago,
created an answer with at least 3 up-votes.
For A: How to validate the SNP calling pipeline?
Popular Question
10 weeks ago,
created a question with more than 1,000 views.
For C++ how to read VCF file in indexed bgzip format?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For C++ how to read VCF file in indexed bgzip format?
Appreciated
3 months ago,
created a post with more than 5 votes.
For Which Bioinformatics Tools Are Written In Python
Popular Question
5 months ago,
created a question with more than 1,000 views.
For C++ how to read VCF file in indexed bgzip format?
Popular Question
5 months ago,
created a question with more than 1,000 views.
For C++ how to read VCF file in indexed bgzip format?
Popular Question
7 months ago,
created a question with more than 1,000 views.
For C++ how to read VCF file in indexed bgzip format?
Great Question
8 months ago,
created a question with more than 5,000 views.
For Which Bioinformatics Tools Are Written In Python
Voter
8 months ago,
voted more than 100 times.
Centurion
8 months ago,
created 100 posts.
Popular Question
9 months ago,
created a question with more than 1,000 views.
For C++ how to read VCF file in indexed bgzip format?
Teacher
9 months ago,
created an answer with at least 3 up-votes.
For A: How to validate the SNP calling pipeline?
Popular Question
13 months ago,
created a question with more than 1,000 views.
For How to find the self aligned repeat region in human genome
Popular Question
13 months ago,
created a question with more than 1,000 views.
For C++ how to read VCF file in indexed bgzip format?
Student
13 months ago,
asked a question with at least 3 up-votes.
For Which Bioinformatics Tools Are Written In Python
Popular Question
14 months ago,
created a question with more than 1,000 views.
For How To Find The Most Frequent Allel Snp In Vcf File
Epic Question
19 months ago,
created a question with more than 10,000 views.
For Which Bioinformatics Tools Are Written In Python
Popular Question
19 months ago,
created a question with more than 1,000 views.
For How To Find The Most Frequent Allel Snp In Vcf File
Popular Question
19 months ago,
created a question with more than 1,000 views.
For How To Find The Most Frequent Allel Snp In Vcf File
Scholar
19 months ago,
created an answer that has been accepted.
For A: Can I get SNP information by individual from dbSNP
Epic Question
2.3 years ago,
created a question with more than 10,000 views.
For Which Bioinformatics Tools Are Written In Python
Good Question
2.3 years ago,
asked a question that was upvoted at least 5 times.
For Which Bioinformatics Tools Are Written In Python
Appreciated
2.4 years ago,
created a post with more than 5 votes.
For Which Journals Should I Follow If I Write Software And Algorithms In Computational Biology?
Epic Question
2.4 years ago,
created a question with more than 10,000 views.
For How To Sort Sam File
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1062 users visited in the last hour