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Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
career
updated 2.6 years ago by 45k • written 4.7 years ago by ★ 1.1k
19
votes
14
replies
17k
views
11 follow
Is there a easy to use GATK pipeline for SNP calling?
GATK
updated 4.9 years ago by ▴ 130 • written 7.6 years ago by ★ 1.1k
12
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4
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42k
views
Forum: BWA command guide
BWA
updated 2.7 years ago by 45k • written 7.7 years ago by ★ 1.1k
32
votes
11
replies
47k
views
9 follow
How To Sort Sam File
samtools sam
updated 2.8 years ago by 45k • written 11.7 years ago by ★ 1.1k
0
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1
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3.5k
views
Comment: C: How to get karyotype information for a certain section of genome.
updated 5.8 years ago by 45k • written 11.4 years ago by ★ 1.1k
46
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14
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29k
views
12 follow
Which Bioinformatics Tools Are Written In Python
python
updated 2.4 years ago by 45k • written 13.2 years ago by ★ 1.1k
1
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0
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6.9k
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Comment: C: How to estimate depth of coverage for a windows size on genome?
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.1k
0
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1
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6.1k
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Comment: C: Samtools Have Trouble "View" Bwa Mem Result, But Good With Bwa Sampe Result?
updated 6.1 years ago by 45k • written 11.6 years ago by ★ 1.1k
8
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9
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5.1k
views
8 follow
Forum: How can I contribute to the Bioinformatics community as a Software Engineer
software-engineer
updated 2.4 years ago by 45k • written 7.0 years ago by ★ 1.1k
0
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1
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5.1k
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Comment: C: How can I contribute to the Bioinformatics community as a Software Engineer
7.0 years ago by Chen Sun ★ 1.1k
1
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0
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5.7k
views
Comment: C: How to validate the SNP calling pipeline?
7.0 years ago by Chen Sun ★ 1.1k
19
votes
11
replies
5.6k
views
7 follow
What'S Easy Framework For Writing Gui Tools In Bioinformatics
visualization
updated 2.4 years ago by 45k • written 12.0 years ago by ★ 1.1k
2
votes
2
replies
1.7k
views
What is the difference between Bioconda and Galaxy?
galaxy bioconda
updated 2.6 years ago by 45k • written 7.2 years ago by ★ 1.1k
0
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1
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1.6k
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Comment: C: Can SNP array handle clustered SNPs
7.5 years ago by Chen Sun ★ 1.1k
0
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3
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1.6k
views
Can SNP array handle clustered SNPs
SNP SNP array SNP calling
7.6 years ago by Chen Sun ★ 1.1k
0
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3
replies
17k
views
Comment: C: Is there a easy to use GATK pipeline for SNP calling?
7.6 years ago by Chen Sun ★ 1.1k
0
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1
reply
16k
views
Comment: C: Where Can I Find A Good Database Of The Repeat Regions Of The Human Genome ?
7.6 years ago by Chen Sun ★ 1.1k
3
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0
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42k
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Comment: C: BWA command guide
7.7 years ago by Chen Sun ★ 1.1k
4
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3
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5.7k
views
Answer: A: How to validate the SNP calling pipeline?
7.7 years ago by Chen Sun ★ 1.1k
0
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0
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5.7k
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Comment: C: How to validate the SNP calling pipeline?
7.7 years ago by Chen Sun ★ 1.1k
0
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0
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6.3k
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Comment: C: I can't install HiC-Pro
7.8 years ago by Chen Sun ★ 1.1k
0
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3
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2.5k
views
What do these 10X Genomics sequencing metrics mean?
10X 10X sequencing 10X Genomics barcode
7.8 years ago by Chen Sun ★ 1.1k
0
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1
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2.5k
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Comment: C: What do these 10X Genomics sequencing metrics mean?
7.8 years ago by Chen Sun ★ 1.1k
3
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4
replies
2.6k
views
In GATK, SNPs and INDELs are called separately or together?
GATK SNP INDEL variant
updated 8.0 years ago by 20 • written 8.7 years ago by ★ 1.1k
0
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1
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26k
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Comment: C: Bioinformatics "Cheat Sheet"
8.1 years ago by Chen Sun ★ 1.1k
2
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0
replies
114k
views
Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
8.1 years ago by Chen Sun ★ 1.1k
0
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0
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2.2k
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Comment: C: Which mapping tool takes read quality score into account
8.1 years ago by Chen Sun ★ 1.1k
1
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4
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2.2k
views
Which mapping tool takes read quality score into account
bwa bowtie2 mapping quality score
updated 8.1 years ago by 35k • written 8.1 years ago by ★ 1.1k
2
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1
reply
2.8k
views
Which Kinds Of Pair-End Reads Direction Do We Have Now?
updated 8.4 years ago by 20 • written 11.7 years ago by ★ 1.1k
2
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2
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5.8k
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Answer: A: How to run local BLAST (Standalone NCBI BLAST+) with Python?
8.5 years ago by Chen Sun ★ 1.1k
0
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0
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3.1k
views
Comment: C: Does jellyfish 2 support kmer size > 31
8.5 years ago by Chen Sun ★ 1.1k
3
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2
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3.1k
views
Answer: A: Does jellyfish 2 support kmer size > 31
8.5 years ago by Chen Sun ★ 1.1k
2
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0
replies
223k
views
Comment: C: Correct Way To Parse A Fasta File In Python
8.5 years ago by Chen Sun ★ 1.1k
14
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15
replies
3.1k
views
Does jellyfish 2 support kmer size > 31
jellyfish kmer kmer counting Jellyfish
8.5 years ago by Chen Sun ★ 1.1k
4
votes
3
replies
1.8k
views
Who is in charge of updating VCF format?
vcf
updated 8.7 years ago by 166k • written 8.7 years ago by ★ 1.1k
4
votes
4
replies
4.5k
views
How To Download Venter Genome
JCVI genome
updated 2.6 years ago by 45k • written 11.7 years ago by ★ 1.1k
0
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0
replies
6.9k
views
Comment: C: where to download blat command tool for windows?
8.7 years ago by Chen Sun ★ 1.1k
10
votes
11
replies
6.9k
views
7 follow
where to download blat command tool for windows?
blat windows
updated 8.8 years ago by ▴ 100 • written 9.5 years ago by ★ 1.1k
0
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0
replies
4.3k
views
Comment: C: Can FM Index be built in linear time?
9.2 years ago by Chen Sun ★ 1.1k
0
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1
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4.3k
views
Comment: C: Can FM Index be built in linear time?
9.2 years ago by Chen Sun ★ 1.1k
14
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6
replies
4.3k
views
Can FM Index be built in linear time?
FM-Index BWA Bowtie2 bowtie alignment
updated 9.2 years ago by 33k • written 9.2 years ago by ★ 1.1k
0
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0
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3.9k
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Comment: C: Is there a Faster tool to convert from .SRA files to .Fastq ?
9.4 years ago by Chen Sun ★ 1.1k
0
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1
reply
130k
views
Comment: C: How To Split A Bam File By Chromosome
9.5 years ago by Chen Sun ★ 1.1k
3
votes
6
replies
3.9k
views
Is there a Faster tool to convert from .SRA files to .Fastq ?
SRA Fastq NCBI
9.5 years ago by Chen Sun ★ 1.1k
0
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0
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3.9k
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Comment: C: Fast way to convert from .SRA files to .Fastq
9.5 years ago by Chen Sun ★ 1.1k
0
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0
replies
3.9k
views
Comment: C: Fast way to convert from .SRA files to .Fastq
9.5 years ago by Chen Sun ★ 1.1k
0
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0
replies
6.9k
views
Comment: C: where to download blat command tool for windows?
9.5 years ago by Chen Sun ★ 1.1k
0
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1
reply
6.9k
views
Comment: C: where to download blat command tool for windows?
9.5 years ago by Chen Sun ★ 1.1k
0
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0
replies
7.0k
views
Comment: C: C++ how to read VCF file in indexed bgzip format?
9.5 years ago by Chen Sun ★ 1.1k
4
votes
8
replies
7.0k
views
C++ how to read VCF file in indexed bgzip format?
samtools bcftools htslib vcftools bgzip
updated 9.5 years ago by ▴ 20 • written 9.5 years ago by ★ 1.1k
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