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Comment:
Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
4 days ago by
Giulio Genovese
▴ 530
0
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0
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630
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Comment:
Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
5 days ago by
Giulio Genovese
▴ 530
2
votes
2
replies
630
views
Answer:
Answer: Current best practive to liftOver many SNVs from hg19 to GRCh38
6 days ago by
Giulio Genovese
▴ 530
1
vote
1
reply
546
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Answer:
Answer: More than 90% of variants were failed to match, using LiftoverVcf of Picard.
7 weeks ago by
Giulio Genovese
▴ 530
0
votes
1
reply
546
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Comment:
Comment: More than 90% of variants were failed to match, using LiftoverVcf of Picard.
7 weeks ago by
Giulio Genovese
▴ 530
1
vote
0
replies
709
views
Comment:
Comment: Why is UCSC lift over failing to convert a specific position?
10 weeks ago by
Giulio Genovese
▴ 530
5
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0
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709
views
Answer:
Answer: Why is UCSC lift over failing to convert a specific position?
10 weeks ago by
Giulio Genovese
▴ 530
2
votes
0
replies
479
views
Comment:
Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
3 months ago by
Giulio Genovese
▴ 530
0
votes
2
replies
572
views
Answer:
Answer: Can Metal merge two GWAS Summary data even if the versions of SNP id are differe
5 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
649
views
Comment:
Comment: 1000 Genome: Cause of duplicate variants with different genotypes
6 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
649
views
Comment:
Comment: 1000 Genome: Cause of duplicate variants with different genotypes
6 months ago by
Giulio Genovese
▴ 530
0
votes
1
reply
649
views
Comment:
Comment: 1000 Genome: Cause of duplicate variants with different genotypes
6 months ago by
Giulio Genovese
▴ 530
0
votes
1
reply
649
views
Comment:
Comment: 1000 Genome: Cause of duplicate variants with different genotypes
6 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
628
views
Answer:
Answer: How to find SNP locations in assemblies other than hg38
6 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
791
views
Comment:
Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
7 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
968
views
Comment:
Comment: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
7 months ago by
Giulio Genovese
▴ 530
0
votes
1
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968
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Comment:
Comment: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
7 months ago by
Giulio Genovese
▴ 530
2
votes
1
reply
968
views
Answer:
Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
7 months ago by
Giulio Genovese
▴ 530
0
votes
1
reply
837
views
Comment:
Comment: Picard Liftover MismatchedRefAllele PsychArray
10 months ago by
Giulio Genovese
▴ 530
1
vote
0
replies
1.5k
views
Comment:
Comment: How to choose LiftOver chain file
11 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
1.6k
views
Comment:
Comment: Idat raw data conversion
11 months ago by
Giulio Genovese
▴ 530
1
vote
1
reply
1.6k
views
Comment:
Comment: Idat raw data conversion
11 months ago by
Giulio Genovese
▴ 530
5
votes
1
reply
1.5k
views
Answer:
Answer: Liftover GRCh37 to hg38 1kg/GATK.
11 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
1.1k
views
Answer:
Answer: how to change the 'bcftools plugin' temp directory
13 months ago by
Giulio Genovese
▴ 530
1
vote
0
replies
720
views
Answer:
Answer: Liftedover vcf header/contig compatibility
13 months ago by
Giulio Genovese
▴ 530
2
votes
0
replies
2.8k
views
Answer:
Answer: Using LiftOver to change genomic build
18 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
2.7k
views
Comment:
Comment: Can't liftover vcf file from hg19 to hg38
18 months ago by
Giulio Genovese
▴ 530
2
votes
0
replies
1.1k
views
Answer:
Answer: Axiom PMRA cel files to VCF format
18 months ago by
Giulio Genovese
▴ 530
1
vote
0
replies
2.7k
views
Comment:
Comment: Can't liftover vcf file from hg19 to hg38
18 months ago by
Giulio Genovese
▴ 530
1
vote
2
replies
2.7k
views
Comment:
Comment: Can't liftover vcf file from hg19 to hg38
18 months ago by
Giulio Genovese
▴ 530
1
vote
1
reply
2.7k
views
Comment:
Comment: Can't liftover vcf file from hg19 to hg38
18 months ago by
Giulio Genovese
▴ 530
5
votes
2
replies
2.7k
views
Answer:
Answer: Can't liftover vcf file from hg19 to hg38
18 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
1.9k
views
Comment:
Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
19 months ago by
Giulio Genovese
▴ 530
1
vote
1
reply
1.9k
views
Answer:
Answer: High ref mismatch rate after liftOver from 23andme hg19 to hg38
19 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
2.6k
views
Answer:
Answer: gatk LiftoverVCF finishes with no output VCF nor error.
19 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
1.4k
views
Answer:
Answer: Looking for LDL GWAS summary stats in hg38
19 months ago by
Giulio Genovese
▴ 530
2
votes
0
replies
3.1k
views
Comment:
Comment: Picard LiftOver rejecting all Variants
20 months ago by
Giulio Genovese
▴ 530
4
votes
1
reply
3.1k
views
Answer:
Answer: Picard LiftOver rejecting all Variants
20 months ago by
Giulio Genovese
▴ 530
0
votes
0
replies
3.7k
views
Comment:
Comment: How can I create an Illumina report in Linux using IDAT files?
3.4 years ago by
Giulio Genovese
▴ 530
0
votes
0
replies
3.7k
views
Comment:
Comment: How can I create an Illumina report in Linux using IDAT files?
3.4 years ago by
Giulio Genovese
▴ 530
0
votes
0
replies
2.5k
views
Comment:
C: What reference build are affymetrix 5.0 arrays?
4.7 years ago by
Giulio Genovese
▴ 530
0
votes
1
reply
2.5k
views
Comment:
C: What reference build are affymetrix 5.0 arrays?
4.7 years ago by
Giulio Genovese
▴ 530
0
votes
1
reply
2.5k
views
Answer:
A: What reference build are affymetrix 5.0 arrays?
4.7 years ago by
Giulio Genovese
▴ 530
0
votes
0
replies
2.3k
views
Answer:
A: SNP array CNV calling for Cancer tissue (.CEL files)
4.7 years ago by
Giulio Genovese
▴ 530
0
votes
0
replies
4.1k
views
Answer:
A: conversion from CEL file to PLINK format (.map, .ped)
4.7 years ago by
Giulio Genovese
▴ 530
0
votes
0
replies
5.5k
views
Answer:
A: How to convert and annotate apt-probeset-genotype into PLINK format
4.7 years ago by
Giulio Genovese
▴ 530
1
vote
1
reply
8.4k
views
Answer:
A: Get Genotypes From Affymetrix Snp 6.0 Array
4.7 years ago by
Giulio Genovese
▴ 530
1
vote
0
replies
4.2k
views
Answer:
A: Illumina Manifest files - A1 vs. A2
4.7 years ago by
Giulio Genovese
▴ 530
0
votes
1
reply
2.0k
views
Answer:
A: Is there an allternative to Affymetrix GTC for Genotyping?
4.7 years ago by
Giulio Genovese
▴ 530
1
vote
1
reply
6.1k
views
Answer:
A: Automate Illumina GenomeStudio With Python Script
4.7 years ago by
Giulio Genovese
▴ 530
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