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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
4 days ago by Giulio Genovese ▴ 530
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630
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
5 days ago by Giulio Genovese ▴ 530
2
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2
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630
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Answer: Answer: Current best practive to liftOver many SNVs from hg19 to GRCh38
6 days ago by Giulio Genovese ▴ 530
1
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1
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546
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Answer: Answer: More than 90% of variants were failed to match, using LiftoverVcf of Picard.
7 weeks ago by Giulio Genovese ▴ 530
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1
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546
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Comment: Comment: More than 90% of variants were failed to match, using LiftoverVcf of Picard.
7 weeks ago by Giulio Genovese ▴ 530
1
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0
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709
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Comment: Comment: Why is UCSC lift over failing to convert a specific position?
10 weeks ago by Giulio Genovese ▴ 530
5
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709
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Answer: Answer: Why is UCSC lift over failing to convert a specific position?
10 weeks ago by Giulio Genovese ▴ 530
2
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0
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479
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Comment: Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
3 months ago by Giulio Genovese ▴ 530
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2
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572
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Answer: Answer: Can Metal merge two GWAS Summary data even if the versions of SNP id are differe
5 months ago by Giulio Genovese ▴ 530
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0
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649
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
6 months ago by Giulio Genovese ▴ 530
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649
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
6 months ago by Giulio Genovese ▴ 530
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1
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649
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
6 months ago by Giulio Genovese ▴ 530
0
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1
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649
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
6 months ago by Giulio Genovese ▴ 530
0
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0
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628
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Answer: Answer: How to find SNP locations in assemblies other than hg38
6 months ago by Giulio Genovese ▴ 530
0
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0
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791
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
7 months ago by Giulio Genovese ▴ 530
0
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0
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968
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Comment: Comment: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
7 months ago by Giulio Genovese ▴ 530
0
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1
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968
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Comment: Comment: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
7 months ago by Giulio Genovese ▴ 530
2
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1
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968
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
7 months ago by Giulio Genovese ▴ 530
0
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1
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837
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Comment: Comment: Picard Liftover MismatchedRefAllele PsychArray
10 months ago by Giulio Genovese ▴ 530
1
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0
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1.5k
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Comment: Comment: How to choose LiftOver chain file
11 months ago by Giulio Genovese ▴ 530
0
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0
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1.6k
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Comment: Comment: Idat raw data conversion
11 months ago by Giulio Genovese ▴ 530
1
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1
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1.6k
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Comment: Comment: Idat raw data conversion
11 months ago by Giulio Genovese ▴ 530
5
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1
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1.5k
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Answer: Answer: Liftover GRCh37 to hg38 1kg/GATK.
11 months ago by Giulio Genovese ▴ 530
0
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0
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1.1k
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Answer: Answer: how to change the 'bcftools plugin' temp directory
13 months ago by Giulio Genovese ▴ 530
1
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0
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720
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Answer: Answer: Liftedover vcf header/contig compatibility
13 months ago by Giulio Genovese ▴ 530
2
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0
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2.8k
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Answer: Answer: Using LiftOver to change genomic build
18 months ago by Giulio Genovese ▴ 530
0
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0
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2.7k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
18 months ago by Giulio Genovese ▴ 530
2
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0
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1.1k
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Answer: Answer: Axiom PMRA cel files to VCF format
18 months ago by Giulio Genovese ▴ 530
1
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0
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2.7k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
18 months ago by Giulio Genovese ▴ 530
1
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2
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2.7k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
18 months ago by Giulio Genovese ▴ 530
1
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1
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2.7k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
18 months ago by Giulio Genovese ▴ 530
5
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2
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2.7k
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Answer: Answer: Can't liftover vcf file from hg19 to hg38
18 months ago by Giulio Genovese ▴ 530
0
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0
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1.9k
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
19 months ago by Giulio Genovese ▴ 530
1
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1
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1.9k
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Answer: Answer: High ref mismatch rate after liftOver from 23andme hg19 to hg38
19 months ago by Giulio Genovese ▴ 530
0
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0
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2.6k
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Answer: Answer: gatk LiftoverVCF finishes with no output VCF nor error.
19 months ago by Giulio Genovese ▴ 530
0
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0
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1.4k
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Answer: Answer: Looking for LDL GWAS summary stats in hg38
19 months ago by Giulio Genovese ▴ 530
2
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0
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3.1k
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Comment: Comment: Picard LiftOver rejecting all Variants
20 months ago by Giulio Genovese ▴ 530
4
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1
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3.1k
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Answer: Answer: Picard LiftOver rejecting all Variants
20 months ago by Giulio Genovese ▴ 530
0
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0
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3.7k
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Comment: Comment: How can I create an Illumina report in Linux using IDAT files?
3.4 years ago by Giulio Genovese ▴ 530
0
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0
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3.7k
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Comment: Comment: How can I create an Illumina report in Linux using IDAT files?
3.4 years ago by Giulio Genovese ▴ 530
0
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0
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2.5k
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Comment: C: What reference build are affymetrix 5.0 arrays?
4.7 years ago by Giulio Genovese ▴ 530
0
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1
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2.5k
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Comment: C: What reference build are affymetrix 5.0 arrays?
4.7 years ago by Giulio Genovese ▴ 530
0
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1
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2.5k
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Answer: A: What reference build are affymetrix 5.0 arrays?
4.7 years ago by Giulio Genovese ▴ 530
0
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0
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2.3k
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Answer: A: SNP array CNV calling for Cancer tissue (.CEL files)
4.7 years ago by Giulio Genovese ▴ 530
0
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0
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4.1k
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Answer: A: conversion from CEL file to PLINK format (.map, .ped)
4.7 years ago by Giulio Genovese ▴ 530
0
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0
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5.5k
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Answer: A: How to convert and annotate apt-probeset-genotype into PLINK format
4.7 years ago by Giulio Genovese ▴ 530
1
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1
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8.4k
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Answer: A: Get Genotypes From Affymetrix Snp 6.0 Array
4.7 years ago by Giulio Genovese ▴ 530
1
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0
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4.2k
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Answer: A: Illumina Manifest files - A1 vs. A2
4.7 years ago by Giulio Genovese ▴ 530
0
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1
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2.0k
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Answer: A: Is there an allternative to Affymetrix GTC for Genotyping?
4.7 years ago by Giulio Genovese ▴ 530
1
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1
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6.1k
views
Answer: A: Automate Illumina GenomeStudio With Python Script
4.7 years ago by Giulio Genovese ▴ 530
64 results • Page 1 of 2
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