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Answer: Answer: Merge 1000 Genome gentotype AND genotype likelihood VCFs together
4 months ago by Giulio Genovese ▴ 630
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806
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Comment: Comment: Idat file processing issue with command line cli
5 months ago by Giulio Genovese ▴ 630
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806
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Comment: Comment: Idat file processing issue with command line cli
5 months ago by Giulio Genovese ▴ 630
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4.6k
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Answer: Answer: Lift over of GWAS summary stat file from Hg38 to Hg19
6 months ago by Giulio Genovese ▴ 630
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Answer: Answer: b37 liftover
8 months ago by Giulio Genovese ▴ 630
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641
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Answer: Answer: Picard LiftoverVCF Maps Variants to Incorrect Chromosomes When Processing Indivi
10 months ago by Giulio Genovese ▴ 630
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978
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Answer: Answer: IDAT to FASTA workflow
11 months ago by Giulio Genovese ▴ 630
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
12 months ago by Giulio Genovese ▴ 630
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5.1k
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
12 months ago by Giulio Genovese ▴ 630
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1
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5.1k
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
12 months ago by Giulio Genovese ▴ 630
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1
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5.1k
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
13 months ago by Giulio Genovese ▴ 630
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5.1k
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
13 months ago by Giulio Genovese ▴ 630
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2
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5.1k
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Answer: Answer: Current best practive to liftOver many SNVs from hg19 to GRCh38
13 months ago by Giulio Genovese ▴ 630
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1
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1.7k
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Answer: Answer: More than 90% of variants were failed to match, using LiftoverVcf of Picard.
14 months ago by Giulio Genovese ▴ 630
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1.7k
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Comment: Comment: More than 90% of variants were failed to match, using LiftoverVcf of Picard.
14 months ago by Giulio Genovese ▴ 630
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2.6k
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Comment: Comment: Why is UCSC lift over failing to convert a specific position?
15 months ago by Giulio Genovese ▴ 630
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2.6k
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Answer: Answer: Why is UCSC lift over failing to convert a specific position?
15 months ago by Giulio Genovese ▴ 630
2
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1.0k
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Comment: Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
16 months ago by Giulio Genovese ▴ 630
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2
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1.0k
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Answer: Answer: Can Metal merge two GWAS Summary data even if the versions of SNP id are differe
18 months ago by Giulio Genovese ▴ 630
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1.5k
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
19 months ago by Giulio Genovese ▴ 630
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1.5k
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
19 months ago by Giulio Genovese ▴ 630
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1
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1.5k
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
19 months ago by Giulio Genovese ▴ 630
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1
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1.5k
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
19 months ago by Giulio Genovese ▴ 630
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1.3k
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Answer: Answer: How to find SNP locations in assemblies other than hg38
20 months ago by Giulio Genovese ▴ 630
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0
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1.6k
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
20 months ago by Giulio Genovese ▴ 630
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2.1k
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Comment: Comment: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
20 months ago by Giulio Genovese ▴ 630
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1
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2.1k
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Comment: Comment: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
20 months ago by Giulio Genovese ▴ 630
2
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1
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2.1k
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
20 months ago by Giulio Genovese ▴ 630
0
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1
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1.5k
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Comment: Comment: Picard Liftover MismatchedRefAllele PsychArray
23 months ago by Giulio Genovese ▴ 630
1
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0
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3.9k
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Comment: Comment: How to choose LiftOver chain file
24 months ago by Giulio Genovese ▴ 630
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0
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2.8k
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Comment: Comment: Idat raw data conversion
2.0 years ago by Giulio Genovese ▴ 630
2
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1
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2.8k
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Comment: Comment: Idat raw data conversion
2.0 years ago by Giulio Genovese ▴ 630
5
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1
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3.9k
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Answer: Answer: Liftover GRCh37 to hg38 1kg/GATK.
2.0 years ago by Giulio Genovese ▴ 630
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0
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2.1k
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Answer: Answer: how to change the 'bcftools plugin' temp directory
2.1 years ago by Giulio Genovese ▴ 630
1
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0
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1.3k
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Answer: Answer: Liftedover vcf header/contig compatibility
2.2 years ago by Giulio Genovese ▴ 630
2
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0
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5.6k
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Answer: Answer: Using LiftOver to change genomic build
2.6 years ago by Giulio Genovese ▴ 630
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0
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4.3k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
2.6 years ago by Giulio Genovese ▴ 630
2
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0
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1.8k
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Answer: Answer: Axiom PMRA cel files to VCF format
2.6 years ago by Giulio Genovese ▴ 630
1
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0
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4.3k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
2.6 years ago by Giulio Genovese ▴ 630
1
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2
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4.3k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
2.6 years ago by Giulio Genovese ▴ 630
1
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1
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4.3k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
2.6 years ago by Giulio Genovese ▴ 630
5
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2
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4.3k
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Answer: Answer: Can't liftover vcf file from hg19 to hg38
2.6 years ago by Giulio Genovese ▴ 630
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0
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3.0k
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
2.7 years ago by Giulio Genovese ▴ 630
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1
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3.0k
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Answer: Answer: High ref mismatch rate after liftOver from 23andme hg19 to hg38
2.7 years ago by Giulio Genovese ▴ 630
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3.7k
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Answer: Answer: gatk LiftoverVCF finishes with no output VCF nor error.
2.7 years ago by Giulio Genovese ▴ 630
0
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0
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2.5k
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Answer: Answer: Looking for LDL GWAS summary stats in hg38
2.7 years ago by Giulio Genovese ▴ 630
2
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0
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4.9k
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Comment: Comment: Picard LiftOver rejecting all Variants
2.7 years ago by Giulio Genovese ▴ 630
4
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1
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4.9k
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Answer: Answer: Picard LiftOver rejecting all Variants
2.7 years ago by Giulio Genovese ▴ 630
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0
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4.9k
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Comment: Comment: How can I create an Illumina report in Linux using IDAT files?
4.5 years ago by Giulio Genovese ▴ 630
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0
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4.9k
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Comment: Comment: How can I create an Illumina report in Linux using IDAT files?
4.5 years ago by Giulio Genovese ▴ 630
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