User: Light92

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Light920
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Posts by Light92

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Answer: A: mpiblast returning an error with a specific FASTA file - Unable to open files
... I have solved my issue... mpiblast didn't work because it was expecting PROTEIN databases (I picked the wrong dataset) and also, the parameter -p in mpiformatdb had to be T and not F! ...
written 4 weeks ago by Light920
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Comment: C: mpiblast returning an error with a specific FASTA file - Unable to open files
... I'll take this into consideration, I'm just a newbie to Bioinformatics and that's what my tutor suggested me to use since it's already installed on our server... Thanks for the suggestion! ...
written 4 weeks ago by Light920
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mpiblast returning an error with a specific FASTA file - Unable to open files
... Hello everyone, I'm having some trouble running a mpiblast script for blastx analysis... **It works perfectly with other datasets, but for some reason I can't understand it doesn't like [\[this specific file as input\]][1]**. The only difference I've noticed with [working files][2] is that the nucle ...
blastx mpiblast blast written 4 weeks ago by Light920
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Comment: C: How to retrieve the original protein code before it has been published on NCBI a
... Actually, no. I was thinking of running my analysis again using the provided databases, but I got curious about this... if there is a place where the matching data are kept and it's a kind of information easy to retrieve. ...
written 4 weeks ago by Light920
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How to retrieve the original protein code before it has been published on NCBI as XP_?
... Hello everyone, I'm new on Biostars and to Bioinformatics in general. I'm having some trouble about NCBI accession numbers, which I need to perform some analysis simulation. I'm using a previously published gene annotation dataset (*Olea europaea var.sylvestris*), published by [Unver et al 2017][1 ...
accession number annotation genbank transcripts written 4 weeks ago by Light920

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Scholar 4 weeks ago, created an answer that has been accepted. For A: mpiblast returning an error with a specific FASTA file - Unable to open files

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