Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
4.2k
views
Plotting Gene Ontology analysis results and questions about Fold Enrichment and other parameters
Ontology Enrichment Gene GO
updated 11 months ago by • 0 • written 3.6 years ago by ▴ 100
2
votes
3
replies
3.6k
views
Weird behaviour - WGCNA hub analysis results in Cytoscape through CytoHubba plugin change every time I run it!
rnaseq wgcna cytoscape hubs cytohubba
updated 13 months ago by ▴ 580 • written 3.4 years ago by ▴ 100
5
votes
5
replies
4.7k
views
WGCNA HeatMap correlating modules and sample conditions
RNAseq heatmap WGCNA conditions clustering
updated 20 months ago by 154k • written 3.7 years ago by ▴ 100
1
vote
4
replies
4.1k
views
WGCNA Analysis - blockwiseModules data processing
WGCNA blockwiseModules
updated 24 months ago by 154k • written 2.2 years ago by ▴ 100
0
votes
0
replies
563
views
WGCNA Analysis - TOM matrix generation time estimation
WGCNA TOM R
2.2 years ago by Raito92 ▴ 100
0
votes
1
reply
1.6k
views
Comment: Comment: Looking for tools to individuate gene-gene correlations from a few candidates
2.9 years ago by Raito92 ▴ 100
2
votes
3
replies
1.6k
views
Looking for tools to individuate gene-gene correlations from a few candidates
CoExpNetViz Cytoscape network coexpression RNA-Seq
updated 2.9 years ago by 9.8k • written 2.9 years ago by ▴ 100
0
votes
1
reply
1.1k
views
Cytoscape plugin CoExpNetViz giving unreproducible results over time
CoExpNetViz Cytoscape network coexpression RNA-Seq
updated 2.8 years ago by ▴ 310 • written 2.9 years ago by ▴ 100
0
votes
0
replies
966
views
KEGG pathway annotation and enrichment analysis on an unannotated organism
kegga KEGG enrichment annotation DEG
2.9 years ago by Raito92 ▴ 100
1
vote
1
reply
3.3k
views
WGCNA exportNetworkToCytoscape weight threshold
co-expression RNA-Seq WGCNA Cytoscape
updated 3.7 years ago by ▴ 650 • written 3.7 years ago by ▴ 100
0
votes
1
reply
4.7k
views
Comment: Comment: WGCNA HeatMap correlating modules and sample conditions
3.7 years ago by Raito92 ▴ 100
5
votes
9
replies
6.6k
views
8 follow
Converting an output de-novo transcriptome assembled with Trinity to a .gff3 file
Trinity
updated 14 months ago by • 0 • written 6.1 years ago by ▴ 100
0
votes
1
reply
2.6k
views
Comment: C: How to merge two gff3 files?
4.8 years ago by Raito92 ▴ 100
2
votes
3
replies
2.6k
views
How to merge two gff3 files?
gff3 merge
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 100
0
votes
0
replies
1.0k
views
A RNASeq gene expression browser
RNA-Seq browser gene expression efp
updated 4.9 years ago by 20 • written 4.9 years ago by ▴ 100
3
votes
3
replies
2.6k
views
Trobules using R function goana to perform GO enrichment analysis
r rnaseq go bioconductor de
updated 5.4 years ago by 20 • written 5.6 years ago by ▴ 100
0
votes
0
replies
855
views
How to analyze RNA Targeted (Gene Panel) Ampliseq data?
ampliseq rna targeted amplicons panel
5.4 years ago by Raito92 ▴ 100
0
votes
0
replies
2.6k
views
Comment: C: Trobules using R function goana to perform GO enrichment analysis
5.6 years ago by Raito92 ▴ 100
0
votes
0
replies
1.7k
views
Comment: C: Performing GO enrichment analyis on DE genes
5.6 years ago by Raito92 ▴ 100
1
vote
3
replies
1.7k
views
Performing GO enrichment analyis on DE genes
de go enrichment rnaseq
5.6 years ago by Raito92 ▴ 100
0
votes
1
reply
2.9k
views
Comment: C: Trimmomatic parameters for Trinity transcriptome assembling
5.7 years ago by Raito92 ▴ 100
0
votes
1
reply
2.9k
views
Comment: C: Trimmomatic parameters for Trinity transcriptome assembling
5.7 years ago by Raito92 ▴ 100
0
votes
0
replies
1.4k
views
Comment: C: min_contig_length parameter in Trinity - Isoforms discrimination
5.7 years ago by Raito92 ▴ 100
0
votes
1
reply
2.9k
views
Comment: C: Trimmomatic parameters for Trinity transcriptome assembling
5.7 years ago by Raito92 ▴ 100
1
vote
2
replies
1.4k
views
min_contig_length parameter in Trinity - Isoforms discrimination
transcriptome assembly trinity
5.7 years ago by Raito92 ▴ 100
3
votes
7
replies
2.9k
views
Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity Assembly transcriptome
5.7 years ago by Raito92 ▴ 100
0
votes
1
reply
3.8k
views
Comment: C: How to distinguish between 16S chloroplast reads and real bacteria ones?
6.0 years ago by Raito92 ▴ 100
0
votes
2
replies
3.8k
views
Comment: C: How to distinguish between 16S chloroplast reads and real bacteria ones?
6.0 years ago by Raito92 ▴ 100
4
votes
9
replies
3.8k
views
How to distinguish between 16S chloroplast reads and real bacteria ones?
metagenomics primers qiime2 sequencing 16s
updated 6.0 years ago by 3.9k • written 6.0 years ago by ▴ 100
0
votes
1
reply
3.8k
views
Comment: C: How to distinguish between 16S chloroplast reads and real bacteria ones?
6.0 years ago by Raito92 ▴ 100
3
votes
3
replies
1.3k
views
Most recent tools for circadian gene expression analysis (in plants)
circadian circadian rhythm circadian genes
updated 6.0 years ago by 12k • written 6.2 years ago by ▴ 100
0
votes
0
replies
2.1k
views
Comment: C: How to perform KEGG enrichment analysis for DE genes from a de-novo transcriptom
6.1 years ago by Raito92 ▴ 100
4
votes
2
replies
2.1k
views
How to perform KEGG enrichment analysis for DE genes from a de-novo transcriptome?
KEGG KEGG Enrichment
6.1 years ago by Raito92 ▴ 100
2
votes
1
reply
1.8k
views
GOplot error - Gene Ontology plot generation errors
goplot gene ontology trinity bioconductor
6.1 years ago by Raito92 ▴ 100
0
votes
1
reply
6.6k
views
Comment: C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
6.1 years ago by Raito92 ▴ 100
5
votes
5
replies
7.8k
views
6 follow
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology go terms goseq
updated 2.9 years ago by • 0 • written 6.1 years ago by ▴ 100
0
votes
2
replies
2.2k
views
Trinity RSEM Bowtie2 align_and_estimate_abundance script error
trinity rsem bowtie2 RNA-Seq
updated 6.2 years ago by 154k • written 6.2 years ago by ▴ 100
0
votes
0
replies
945
views
Molecular timetable method based tools for circadian gene expression?
circadian genes circadian gene expression
6.2 years ago by Raito92 ▴ 100
1
vote
0
replies
1.3k
views
Comment: C: Most recent tools for circadian gene expression analysis (in plants)
6.2 years ago by Raito92 ▴ 100
1
vote
3
replies
1.3k
views
mpiblast returning an error with a specific FASTA file - Unable to open files
mpiblast blast blastx
6.3 years ago by Raito92 ▴ 100
0
votes
0
replies
1.3k
views
Answer: A: mpiblast returning an error with a specific FASTA file - Unable to open files
6.3 years ago by Raito92 ▴ 100
0
votes
0
replies
1.3k
views
Comment: C: mpiblast returning an error with a specific FASTA file - Unable to open files
6.3 years ago by Raito92 ▴ 100
0
votes
1
reply
1.5k
views
Comment: C: How to retrieve the original protein code before it has been published on NCBI a
6.3 years ago by Raito92 ▴ 100
1
vote
3
replies
1.5k
views
How to retrieve the original protein code before it has been published on NCBI as XP_?
genbank accession number annotation transcripts
6.3 years ago by Raito92 ▴ 100
44 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6