Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
670
views
Comment: Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
12 weeks ago by Jordan M Eizenga ▴ 690
1
vote
1
reply
575
views
Answer: Answer: Which pangenome graph (full/clip/filter/sampled) to use when align RNA-seq with
12 weeks ago by Jordan M Eizenga ▴ 690
0
votes
2
replies
670
views
Comment: Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
3 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
414
views
Answer: Answer: vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
3 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
347
views
Comment: Comment: split gamp by chromosome or extract specific regions.
3 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
885
views
Comment: Comment: vg autoindex memory issues Signal 6 has occured
3 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
446
views
Answer: Answer: fragment size estimation during vg mpmap and rpvg
3 months ago by Jordan M Eizenga ▴ 690
2
votes
0
replies
407
views
Answer: Answer: Does vg provides an api?
5 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
914
views
Comment: Comment: question about Varias of graph format. How to get the sequence and source of a
6 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
614
views
Comment: Comment: VG - Verifying presence or absence of variants in Pangenome Graph
6 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
614
views
Answer: Answer: VG - Verifying presence or absence of variants in Pangenome Graph
7 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
1.3k
views
Comment: Comment: sequenceTubeMap input files
7 months ago by Jordan M Eizenga ▴ 690
1
vote
1
reply
1.1k
views
Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
7 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
1.3k
views
Comment: Comment: sequenceTubeMap input files
7 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
1.3k
views
Comment: Comment: sequenceTubeMap input files
7 months ago by Jordan M Eizenga ▴ 690
1
vote
1
reply
1.3k
views
Comment: Comment: sequenceTubeMap input files
7 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
1.1k
views
Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
7 months ago by Jordan M Eizenga ▴ 690
2
votes
1
reply
1.1k
views
Answer: Answer: advice for visualizing a graph genome constructed by "vg construct"
7 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
377
views
Comment: Comment: Simulating mRNA-seq data using VG - theoretical question
7 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
415
views
Comment: Comment: compare vg stat scores
7 months ago by Jordan M Eizenga ▴ 690
1
vote
1
reply
1.3k
views
Comment: Comment: sequenceTubeMap input files
7 months ago by Jordan M Eizenga ▴ 690
3
votes
1
reply
1.3k
views
Answer: Answer: sequenceTubeMap input files
7 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
541
views
Comment: Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
8 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
1.3k
views
Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
8 months ago by Jordan M Eizenga ▴ 690
1
vote
1
reply
1.3k
views
Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
9 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
1.3k
views
Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
9 months ago by Jordan M Eizenga ▴ 690
1
vote
2
replies
885
views
Comment: Comment: vg autoindex memory issues Signal 6 has occured
9 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
918
views
Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
9 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
400
views
Comment: Comment: vg giraffe, accept admixed single and paired reads as input
9 months ago by Jordan M Eizenga ▴ 690
1
vote
1
reply
918
views
Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
9 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
416
views
Comment: Comment: Extracting haplotype-specific annotations from splicing graph
9 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
556
views
Comment: Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
9 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
469
views
Comment: Comment: Help with VG Toolkit: VCF Output is Empty
10 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
1.2k
views
Comment: Comment: Does vg call allow fuzzy match during SV calling?
12 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
1.2k
views
Comment: Comment: Does vg call allow fuzzy match during SV calling?
12 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
1.2k
views
Comment: Comment: Does vg call allow fuzzy match during SV calling?
12 months ago by Jordan M Eizenga ▴ 690
1
vote
1
reply
1.2k
views
Answer: Answer: Does vg call allow fuzzy match during SV calling?
12 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
594
views
Comment: Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
13 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
653
views
Comment: Comment: Problem with vg autoindex with phased VCF
13 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
596
views
Comment: Comment: How to split alignment into smaller chunks with node range
13 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
859
views
Comment: Comment: vg sim error: [insert_gbwt_path()] path name already exists:
14 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
1.5k
views
Comment: Comment: vg: How to find node Position and source(sample) ?
14 months ago by Jordan M Eizenga ▴ 690
0
votes
0
replies
766
views
Answer: Answer: The number of variations in the pan-genome is reduced compared to the variations
15 months ago by Jordan M Eizenga ▴ 690
1
vote
1
reply
1.5k
views
Answer: Answer: How to find node Postion and source(sample) ?
15 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
2.0k
views
Comment: Comment: need interpretations for the vg call output
16 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
1.2k
views
Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
16 months ago by Jordan M Eizenga ▴ 690
2
votes
1
reply
1.7k
views
Answer: Answer: vg call - Selecting reference path to call on
16 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
2.0k
views
Answer: Answer: need interpretations for the vg call output
16 months ago by Jordan M Eizenga ▴ 690
0
votes
1
reply
1.3k
views
Comment: Comment: Lack of correspondance of GFA node IDs to giraffe/call node IDs
17 months ago by Jordan M Eizenga ▴ 690
1
vote
0
replies
1.1k
views
Comment: Comment: Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pa
17 months ago by Jordan M Eizenga ▴ 690
124 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6