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Comment:
Comment: Trouble building combined pangenome graph with circularized genomes + embedded O
4 weeks ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
507
views
Answer:
Answer: Question about vg giraffe, vg surject and Visualization tool for mapping result
9 weeks ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
946
views
Comment:
Comment: Is vg toolkit suitable for haplotype calling?
11 weeks ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
946
views
Comment:
Comment: Is vg toolkit suitable for haplotype calling?
11 weeks ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
946
views
Comment:
Comment: Is vg toolkit suitable for haplotype calling?
11 weeks ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
946
views
Answer:
Answer: Is vg toolkit suitable for haplotype calling?
12 weeks ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
683
views
Comment:
Comment: What does vg autoindex mpmap do?
3 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
683
views
Answer:
Answer: What does vg autoindex mpmap do?
3 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
584
views
Answer:
Answer: Annotate GFA with coverage depth
3 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
1000
views
Comment:
Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
6 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
940
views
Answer:
Answer: Which pangenome graph (full/clip/filter/sampled) to use when align RNA-seq with
7 months ago by
Jordan M Eizenga
▴ 740
0
votes
2
replies
1000
views
Comment:
Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
7 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
543
views
Answer:
Answer: vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
7 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
521
views
Comment:
Comment: split gamp by chromosome or extract specific regions.
8 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
1.1k
views
Comment:
Comment: vg autoindex memory issues Signal 6 has occured
8 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
639
views
Answer:
Answer: fragment size estimation during vg mpmap and rpvg
8 months ago by
Jordan M Eizenga
▴ 740
2
votes
0
replies
562
views
Answer:
Answer: Does vg provides an api?
9 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
1.2k
views
Comment:
Comment: question about Varias of graph format. How to get the sequence and source of a
10 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
897
views
Comment:
Comment: VG - Verifying presence or absence of variants in Pangenome Graph
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
897
views
Answer:
Answer: VG - Verifying presence or absence of variants in Pangenome Graph
11 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
1.7k
views
Comment:
Comment: sequenceTubeMap input files
11 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.5k
views
Comment:
Comment: advice for visualizing a graph genome constructed by "vg construct"
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.7k
views
Comment:
Comment: sequenceTubeMap input files
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.7k
views
Comment:
Comment: sequenceTubeMap input files
11 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.7k
views
Comment:
Comment: sequenceTubeMap input files
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.5k
views
Comment:
Comment: advice for visualizing a graph genome constructed by "vg construct"
11 months ago by
Jordan M Eizenga
▴ 740
2
votes
1
reply
1.5k
views
Answer:
Answer: advice for visualizing a graph genome constructed by "vg construct"
11 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
558
views
Comment:
Comment: Simulating mRNA-seq data using VG - theoretical question
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
567
views
Comment:
Comment: compare vg stat scores
11 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.7k
views
Comment:
Comment: sequenceTubeMap input files
11 months ago by
Jordan M Eizenga
▴ 740
3
votes
1
reply
1.7k
views
Answer:
Answer: sequenceTubeMap input files
11 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
726
views
Comment:
Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
12 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.5k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
13 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.5k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
13 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.5k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
13 months ago by
Jordan M Eizenga
▴ 740
1
vote
2
replies
1.1k
views
Comment:
Comment: vg autoindex memory issues Signal 6 has occured
13 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.2k
views
Comment:
Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
13 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
540
views
Comment:
Comment: vg giraffe, accept admixed single and paired reads as input
13 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.2k
views
Comment:
Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
13 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
564
views
Comment:
Comment: Extracting haplotype-specific annotations from splicing graph
13 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
765
views
Comment:
Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
13 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
651
views
Comment:
Comment: Help with VG Toolkit: VCF Output is Empty
14 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
1.5k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
16 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.5k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
16 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.5k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
16 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.5k
views
Answer:
Answer: Does vg call allow fuzzy match during SV calling?
16 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
838
views
Comment:
Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
17 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
838
views
Comment:
Comment: Problem with vg autoindex with phased VCF
17 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
751
views
Comment:
Comment: How to split alignment into smaller chunks with node range
18 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
1.1k
views
Comment:
Comment: vg sim error: [insert_gbwt_path()] path name already exists:
18 months ago by
Jordan M Eizenga
▴ 740
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