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Comment: Comment: Does vg call allow fuzzy match during SV calling?
5 weeks ago by Jordan M Eizenga ▴ 460
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457
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
5 weeks ago by Jordan M Eizenga ▴ 460
0
votes
1
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457
views
Comment: Comment: Does vg call allow fuzzy match during SV calling?
5 weeks ago by Jordan M Eizenga ▴ 460
1
vote
1
reply
457
views
Answer: Answer: Does vg call allow fuzzy match during SV calling?
5 weeks ago by Jordan M Eizenga ▴ 460
1
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267
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Comment: Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
9 weeks ago by Jordan M Eizenga ▴ 460
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1
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328
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Comment: Comment: Problem with vg autoindex with phased VCF
11 weeks ago by Jordan M Eizenga ▴ 460
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284
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Comment: Comment: How to split alignment into smaller chunks with node range
11 weeks ago by Jordan M Eizenga ▴ 460
1
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0
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459
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Comment: Comment: vg sim error: [insert_gbwt_path()] path name already exists:
3 months ago by Jordan M Eizenga ▴ 460
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0
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699
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Comment: Comment: vg: How to find node Position and source(sample) ?
3 months ago by Jordan M Eizenga ▴ 460
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0
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540
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Answer: Answer: The number of variations in the pan-genome is reduced compared to the variations
4 months ago by Jordan M Eizenga ▴ 460
1
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1
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699
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Answer: Answer: How to find node Postion and source(sample) ?
4 months ago by Jordan M Eizenga ▴ 460
1
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1.1k
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Comment: Comment: need interpretations for the vg call output
5 months ago by Jordan M Eizenga ▴ 460
1
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0
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708
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Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
5 months ago by Jordan M Eizenga ▴ 460
1
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1
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907
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Answer: Answer: vg call - Selecting reference path to call on
5 months ago by Jordan M Eizenga ▴ 460
1
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0
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1.1k
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Answer: Answer: need interpretations for the vg call output
5 months ago by Jordan M Eizenga ▴ 460
0
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1
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743
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Comment: Comment: Lack of correspondance of GFA node IDs to giraffe/call node IDs
6 months ago by Jordan M Eizenga ▴ 460
1
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0
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671
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Comment: Comment: Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pa
6 months ago by Jordan M Eizenga ▴ 460
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0
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455
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Answer: Answer: Interpretation question regarding vg call result vcf
6 months ago by Jordan M Eizenga ▴ 460
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0
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524
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Comment: Comment: HiFi read alignment with vg giraffe
6 months ago by Jordan M Eizenga ▴ 460
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0
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511
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Comment: Comment: Bug of vg surject
6 months ago by Jordan M Eizenga ▴ 460
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1
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511
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Comment: Comment: Bug of vg surject
6 months ago by Jordan M Eizenga ▴ 460
0
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0
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420
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Comment: Comment: Identify parent of each read in a GAF
6 months ago by Jordan M Eizenga ▴ 460
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0
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481
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Comment: Comment: vg rna pantranscriptome
6 months ago by Jordan M Eizenga ▴ 460
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1
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1.4k
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Comment: Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
7 months ago by Jordan M Eizenga ▴ 460
0
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1
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2.3k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
7 months ago by Jordan M Eizenga ▴ 460
0
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1
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2.3k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
7 months ago by Jordan M Eizenga ▴ 460
0
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0
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2.3k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
7 months ago by Jordan M Eizenga ▴ 460
0
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2
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1.4k
views
Comment: Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
7 months ago by Jordan M Eizenga ▴ 460
2
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1
reply
1.4k
views
Comment: Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
7 months ago by Jordan M Eizenga ▴ 460
1
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1
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559
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Comment: Comment: VG node not present in graph
7 months ago by Jordan M Eizenga ▴ 460
1
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0
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1.2k
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Answer: Answer: Is there a 1000GP pangenome available?
7 months ago by Jordan M Eizenga ▴ 460
0
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2
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2.3k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
0
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2
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2.3k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
0
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1
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2.3k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
0
votes
1
reply
2.3k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
0
votes
1
reply
2.3k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
0
votes
1
reply
2.3k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
0
votes
1
reply
2.3k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
2
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0
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1.2k
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Comment: Comment: How to identify which genome the variations in the pan-genome graph originate fr
8 months ago by Jordan M Eizenga ▴ 460
0
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0
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783
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Comment: Comment: how to compare mapping of WES samples to human pangenome?
8 months ago by Jordan M Eizenga ▴ 460
1
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2
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783
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Comment: Comment: how to compare mapping of WES samples to human pangenome?
8 months ago by Jordan M Eizenga ▴ 460
1
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0
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1.2k
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Comment: Comment: How to identify which genome the variations in the pan-genome graph originate fr
8 months ago by Jordan M Eizenga ▴ 460
1
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1
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1.4k
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Comment: Comment: VG Giraffe multi-mapped reads and definition for MAPQ score
8 months ago by Jordan M Eizenga ▴ 460
1
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0
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2.4k
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Comment: Comment: SV calling using giraffe/vg
8 months ago by Jordan M Eizenga ▴ 460
0
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2
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1.4k
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Comment: Comment: VG Giraffe multi-mapped reads and definition for MAPQ score
8 months ago by Jordan M Eizenga ▴ 460
0
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0
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954
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Comment: Comment: vg map time consuming
8 months ago by Jordan M Eizenga ▴ 460
0
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1
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836
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Comment: Comment: Substantial reduction in read mapping following VG surject
8 months ago by Jordan M Eizenga ▴ 460
2
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1
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971
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Answer: Answer: Indexing the human pangenome draft
9 months ago by Jordan M Eizenga ▴ 460
1
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0
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971
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Comment: Comment: Indexing the human pangenome draft
9 months ago by Jordan M Eizenga ▴ 460
1
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0
replies
1.1k
views
Comment: Comment: population-level stratagy of vg call
9 months ago by Jordan M Eizenga ▴ 460
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