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Comment: Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
7 weeks ago by Jordan M Eizenga ▴ 760
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Answer: Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
8 weeks ago by Jordan M Eizenga ▴ 760
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Comment: Comment: Trouble building combined pangenome graph with circularized genomes + embedded O
4 months ago by Jordan M Eizenga ▴ 760
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Answer: Answer: Question about vg giraffe, vg surject and Visualization tool for mapping result
5 months ago by Jordan M Eizenga ▴ 760
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1.4k
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Comment: Comment: Is vg toolkit suitable for haplotype calling?
6 months ago by Jordan M Eizenga ▴ 760
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1.4k
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Comment: Comment: Is vg toolkit suitable for haplotype calling?
6 months ago by Jordan M Eizenga ▴ 760
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1.4k
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Comment: Comment: Is vg toolkit suitable for haplotype calling?
6 months ago by Jordan M Eizenga ▴ 760
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1.4k
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Answer: Answer: Is vg toolkit suitable for haplotype calling?
6 months ago by Jordan M Eizenga ▴ 760
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1.0k
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Comment: Comment: What does vg autoindex mpmap do?
6 months ago by Jordan M Eizenga ▴ 760
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1.0k
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Answer: Answer: What does vg autoindex mpmap do?
6 months ago by Jordan M Eizenga ▴ 760
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792
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Answer: Answer: Annotate GFA with coverage depth
6 months ago by Jordan M Eizenga ▴ 760
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Comment: Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
10 months ago by Jordan M Eizenga ▴ 760
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1.2k
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Answer: Answer: Which pangenome graph (full/clip/filter/sampled) to use when align RNA-seq with
10 months ago by Jordan M Eizenga ▴ 760
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2
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1.3k
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Comment: Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
10 months ago by Jordan M Eizenga ▴ 760
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679
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Answer: Answer: vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
11 months ago by Jordan M Eizenga ▴ 760
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648
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Comment: Comment: split gamp by chromosome or extract specific regions.
11 months ago by Jordan M Eizenga ▴ 760
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1.3k
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
11 months ago by Jordan M Eizenga ▴ 760
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767
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Answer: Answer: fragment size estimation during vg mpmap and rpvg
11 months ago by Jordan M Eizenga ▴ 760
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709
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Answer: Answer: Does vg provides an api?
13 months ago by Jordan M Eizenga ▴ 760
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1.4k
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Comment: Comment: question about Varias of graph format. How to get the sequence and source of a
14 months ago by Jordan M Eizenga ▴ 760
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1.1k
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Comment: Comment: VG - Verifying presence or absence of variants in Pangenome Graph
14 months ago by Jordan M Eizenga ▴ 760
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1.1k
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Answer: Answer: VG - Verifying presence or absence of variants in Pangenome Graph
14 months ago by Jordan M Eizenga ▴ 760
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2.2k
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Comment: Comment: sequenceTubeMap input files
14 months ago by Jordan M Eizenga ▴ 760
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1.9k
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
14 months ago by Jordan M Eizenga ▴ 760
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1
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2.2k
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Comment: Comment: sequenceTubeMap input files
14 months ago by Jordan M Eizenga ▴ 760
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1
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2.2k
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Comment: Comment: sequenceTubeMap input files
14 months ago by Jordan M Eizenga ▴ 760
1
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1
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2.2k
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Comment: Comment: sequenceTubeMap input files
14 months ago by Jordan M Eizenga ▴ 760
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1
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1.9k
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
14 months ago by Jordan M Eizenga ▴ 760
2
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1
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1.9k
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Answer: Answer: advice for visualizing a graph genome constructed by "vg construct"
15 months ago by Jordan M Eizenga ▴ 760
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649
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Comment: Comment: Simulating mRNA-seq data using VG - theoretical question
15 months ago by Jordan M Eizenga ▴ 760
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644
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Comment: Comment: compare vg stat scores
15 months ago by Jordan M Eizenga ▴ 760
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1
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2.2k
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Comment: Comment: sequenceTubeMap input files
15 months ago by Jordan M Eizenga ▴ 760
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1
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2.2k
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Answer: Answer: sequenceTubeMap input files
15 months ago by Jordan M Eizenga ▴ 760
1
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884
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Comment: Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
15 months ago by Jordan M Eizenga ▴ 760
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1
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1.7k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
16 months ago by Jordan M Eizenga ▴ 760
1
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1
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1.7k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
16 months ago by Jordan M Eizenga ▴ 760
0
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1
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1.7k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
16 months ago by Jordan M Eizenga ▴ 760
1
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2
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1.3k
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
16 months ago by Jordan M Eizenga ▴ 760
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1
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1.4k
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
16 months ago by Jordan M Eizenga ▴ 760
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0
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617
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Comment: Comment: vg giraffe, accept admixed single and paired reads as input
16 months ago by Jordan M Eizenga ▴ 760
1
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1
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1.4k
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
16 months ago by Jordan M Eizenga ▴ 760
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637
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Comment: Comment: Extracting haplotype-specific annotations from splicing graph
16 months ago by Jordan M Eizenga ▴ 760
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1.0k
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Comment: Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
16 months ago by Jordan M Eizenga ▴ 760
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773
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Comment: Comment: Help with VG Toolkit: VCF Output is Empty
17 months ago by Jordan M Eizenga ▴ 760
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1.8k
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
20 months ago by Jordan M Eizenga ▴ 760
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1
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1.8k
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
20 months ago by Jordan M Eizenga ▴ 760
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1
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1.8k
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
20 months ago by Jordan M Eizenga ▴ 760
1
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1
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1.8k
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Answer: Answer: Does vg call allow fuzzy match during SV calling?
20 months ago by Jordan M Eizenga ▴ 760
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1.0k
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Comment: Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
20 months ago by Jordan M Eizenga ▴ 760
0
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1
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949
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Comment: Comment: Problem with vg autoindex with phased VCF
21 months ago by Jordan M Eizenga ▴ 760
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