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344
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Comment: Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
6 days ago by Jordan M Eizenga ▴ 650
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253
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Comment: Comment: split gamp by chromosome or extract specific regions.
23 days ago by Jordan M Eizenga ▴ 650
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648
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
23 days ago by Jordan M Eizenga ▴ 650
1
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744
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Comment: Comment: question about Varias of graph format. How to get the sequence and source of a
3 months ago by Jordan M Eizenga ▴ 650
0
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0
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427
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Comment: Comment: VG - Verifying presence or absence of variants in Pangenome Graph
3 months ago by Jordan M Eizenga ▴ 650
1
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0
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858
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Comment: Comment: sequenceTubeMap input files
4 months ago by Jordan M Eizenga ▴ 650
1
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1
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730
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
4 months ago by Jordan M Eizenga ▴ 650
0
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1
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858
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Comment: Comment: sequenceTubeMap input files
4 months ago by Jordan M Eizenga ▴ 650
0
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1
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858
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Comment: Comment: sequenceTubeMap input files
4 months ago by Jordan M Eizenga ▴ 650
1
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1
reply
858
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Comment: Comment: sequenceTubeMap input files
4 months ago by Jordan M Eizenga ▴ 650
0
votes
1
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730
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
4 months ago by Jordan M Eizenga ▴ 650
1
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0
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268
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Comment: Comment: Simulating mRNA-seq data using VG - theoretical question
4 months ago by Jordan M Eizenga ▴ 650
0
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0
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295
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Comment: Comment: compare vg stat scores
4 months ago by Jordan M Eizenga ▴ 650
1
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1
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858
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Comment: Comment: sequenceTubeMap input files
4 months ago by Jordan M Eizenga ▴ 650
1
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0
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386
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Comment: Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
5 months ago by Jordan M Eizenga ▴ 650
0
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1
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1.1k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
5 months ago by Jordan M Eizenga ▴ 650
1
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1
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1.1k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
5 months ago by Jordan M Eizenga ▴ 650
0
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1
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1.1k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
5 months ago by Jordan M Eizenga ▴ 650
1
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2
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648
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
5 months ago by Jordan M Eizenga ▴ 650
0
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1
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613
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
6 months ago by Jordan M Eizenga ▴ 650
0
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0
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298
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Comment: Comment: vg giraffe, accept admixed single and paired reads as input
6 months ago by Jordan M Eizenga ▴ 650
1
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1
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613
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
6 months ago by Jordan M Eizenga ▴ 650
0
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0
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325
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Comment: Comment: Extracting haplotype-specific annotations from splicing graph
6 months ago by Jordan M Eizenga ▴ 650
0
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0
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396
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Comment: Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
6 months ago by Jordan M Eizenga ▴ 650
0
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0
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377
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Comment: Comment: Help with VG Toolkit: VCF Output is Empty
7 months ago by Jordan M Eizenga ▴ 650
1
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0
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900
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
9 months ago by Jordan M Eizenga ▴ 650
0
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1
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900
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
9 months ago by Jordan M Eizenga ▴ 650
0
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1
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900
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
9 months ago by Jordan M Eizenga ▴ 650
1
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0
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483
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Comment: Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
10 months ago by Jordan M Eizenga ▴ 650
0
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1
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534
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Comment: Comment: Problem with vg autoindex with phased VCF
10 months ago by Jordan M Eizenga ▴ 650
0
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0
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491
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Comment: Comment: How to split alignment into smaller chunks with node range
10 months ago by Jordan M Eizenga ▴ 650
1
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0
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723
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Comment: Comment: vg sim error: [insert_gbwt_path()] path name already exists:
11 months ago by Jordan M Eizenga ▴ 650
0
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0
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1.2k
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Comment: Comment: vg: How to find node Position and source(sample) ?
11 months ago by Jordan M Eizenga ▴ 650
1
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0
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1.7k
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Comment: Comment: need interpretations for the vg call output
13 months ago by Jordan M Eizenga ▴ 650
0
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1
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1.1k
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Comment: Comment: Lack of correspondance of GFA node IDs to giraffe/call node IDs
14 months ago by Jordan M Eizenga ▴ 650
1
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0
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961
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Comment: Comment: Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pa
14 months ago by Jordan M Eizenga ▴ 650
0
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0
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766
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Comment: Comment: HiFi read alignment with vg giraffe
14 months ago by Jordan M Eizenga ▴ 650
0
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0
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727
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Comment: Comment: Bug of vg surject
14 months ago by Jordan M Eizenga ▴ 650
0
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1
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727
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Comment: Comment: Bug of vg surject
14 months ago by Jordan M Eizenga ▴ 650
0
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0
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613
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Comment: Comment: Identify parent of each read in a GAF
14 months ago by Jordan M Eizenga ▴ 650
0
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0
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714
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Comment: Comment: vg rna pantranscriptome
15 months ago by Jordan M Eizenga ▴ 650
0
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1
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1.8k
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Comment: Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
15 months ago by Jordan M Eizenga ▴ 650
0
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1
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3.2k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Jordan M Eizenga ▴ 650
0
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1
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3.2k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Jordan M Eizenga ▴ 650
0
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0
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3.2k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Jordan M Eizenga ▴ 650
0
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2
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1.8k
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Comment: Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
15 months ago by Jordan M Eizenga ▴ 650
2
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1
reply
1.8k
views
Comment: Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
15 months ago by Jordan M Eizenga ▴ 650
1
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1
reply
805
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Comment: Comment: VG node not present in graph
15 months ago by Jordan M Eizenga ▴ 650
0
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2
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3.2k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
16 months ago by Jordan M Eizenga ▴ 650
0
votes
2
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3.2k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
16 months ago by Jordan M Eizenga ▴ 650
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