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288
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Comment:
Comment: Is vg toolkit suitable for haplotype calling?
15 hours ago by
Jordan M Eizenga
▴ 700
1
vote
1
reply
288
views
Comment:
Comment: Is vg toolkit suitable for haplotype calling?
2 days ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
422
views
Comment:
Comment: What does vg autoindex mpmap do?
12 days ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
761
views
Comment:
Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
4 months ago by
Jordan M Eizenga
▴ 700
0
votes
2
replies
761
views
Comment:
Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
4 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
379
views
Comment:
Comment: split gamp by chromosome or extract specific regions.
5 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
953
views
Comment:
Comment: vg autoindex memory issues Signal 6 has occured
5 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
976
views
Comment:
Comment: question about Varias of graph format. How to get the sequence and source of a
7 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
683
views
Comment:
Comment: VG - Verifying presence or absence of variants in Pangenome Graph
8 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
1.4k
views
Comment:
Comment: sequenceTubeMap input files
8 months ago by
Jordan M Eizenga
▴ 700
1
vote
1
reply
1.2k
views
Comment:
Comment: advice for visualizing a graph genome constructed by "vg construct"
8 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
1.4k
views
Comment:
Comment: sequenceTubeMap input files
8 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
1.4k
views
Comment:
Comment: sequenceTubeMap input files
8 months ago by
Jordan M Eizenga
▴ 700
1
vote
1
reply
1.4k
views
Comment:
Comment: sequenceTubeMap input files
8 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
1.2k
views
Comment:
Comment: advice for visualizing a graph genome constructed by "vg construct"
8 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
413
views
Comment:
Comment: Simulating mRNA-seq data using VG - theoretical question
8 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
446
views
Comment:
Comment: compare vg stat scores
8 months ago by
Jordan M Eizenga
▴ 700
1
vote
1
reply
1.4k
views
Comment:
Comment: sequenceTubeMap input files
9 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
585
views
Comment:
Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
9 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
1.3k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
10 months ago by
Jordan M Eizenga
▴ 700
1
vote
1
reply
1.3k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
10 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
1.3k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
10 months ago by
Jordan M Eizenga
▴ 700
1
vote
2
replies
953
views
Comment:
Comment: vg autoindex memory issues Signal 6 has occured
10 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
985
views
Comment:
Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
10 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
431
views
Comment:
Comment: vg giraffe, accept admixed single and paired reads as input
10 months ago by
Jordan M Eizenga
▴ 700
1
vote
1
reply
985
views
Comment:
Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
10 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
443
views
Comment:
Comment: Extracting haplotype-specific annotations from splicing graph
10 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
605
views
Comment:
Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
10 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
513
views
Comment:
Comment: Help with VG Toolkit: VCF Output is Empty
11 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
1.3k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
13 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
1.3k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
13 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
1.3k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
13 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
670
views
Comment:
Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
14 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
689
views
Comment:
Comment: Problem with vg autoindex with phased VCF
15 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
619
views
Comment:
Comment: How to split alignment into smaller chunks with node range
15 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
903
views
Comment:
Comment: vg sim error: [insert_gbwt_path()] path name already exists:
15 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
1.6k
views
Comment:
Comment: vg: How to find node Position and source(sample) ?
15 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
2.1k
views
Comment:
Comment: need interpretations for the vg call output
17 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
1.4k
views
Comment:
Comment: Lack of correspondance of GFA node IDs to giraffe/call node IDs
18 months ago by
Jordan M Eizenga
▴ 700
1
vote
0
replies
1.2k
views
Comment:
Comment: Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pa
18 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
927
views
Comment:
Comment: HiFi read alignment with vg giraffe
18 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
899
views
Comment:
Comment: Bug of vg surject
19 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
899
views
Comment:
Comment: Bug of vg surject
19 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
754
views
Comment:
Comment: Identify parent of each read in a GAF
19 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
874
views
Comment:
Comment: vg rna pantranscriptome
19 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
2.1k
views
Comment:
Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
20 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
3.9k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
20 months ago by
Jordan M Eizenga
▴ 700
0
votes
1
reply
3.9k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
20 months ago by
Jordan M Eizenga
▴ 700
0
votes
0
replies
3.9k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
20 months ago by
Jordan M Eizenga
▴ 700
0
votes
2
replies
2.1k
views
Comment:
Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
20 months ago by
Jordan M Eizenga
▴ 700
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