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145
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Comment: Comment: Help with VG Toolkit: VCF Output is Empty
27 minutes ago by Jordan M Eizenga ▴ 460
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524
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
10 weeks ago by Jordan M Eizenga ▴ 460
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1
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524
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
10 weeks ago by Jordan M Eizenga ▴ 460
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1
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524
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
10 weeks ago by Jordan M Eizenga ▴ 460
1
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1
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524
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Answer: Answer: Does vg call allow fuzzy match during SV calling?
10 weeks ago by Jordan M Eizenga ▴ 460
1
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0
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294
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Comment: Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
3 months ago by Jordan M Eizenga ▴ 460
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1
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354
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Comment: Comment: Problem with vg autoindex with phased VCF
3 months ago by Jordan M Eizenga ▴ 460
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0
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307
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Comment: Comment: How to split alignment into smaller chunks with node range
3 months ago by Jordan M Eizenga ▴ 460
1
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0
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480
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Comment: Comment: vg sim error: [insert_gbwt_path()] path name already exists:
4 months ago by Jordan M Eizenga ▴ 460
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0
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741
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Comment: Comment: vg: How to find node Position and source(sample) ?
4 months ago by Jordan M Eizenga ▴ 460
0
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0
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558
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Answer: Answer: The number of variations in the pan-genome is reduced compared to the variations
5 months ago by Jordan M Eizenga ▴ 460
1
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1
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741
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Answer: Answer: How to find node Postion and source(sample) ?
5 months ago by Jordan M Eizenga ▴ 460
1
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0
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1.2k
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Comment: Comment: need interpretations for the vg call output
6 months ago by Jordan M Eizenga ▴ 460
1
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0
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767
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Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
6 months ago by Jordan M Eizenga ▴ 460
1
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1
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1.0k
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Answer: Answer: vg call - Selecting reference path to call on
6 months ago by Jordan M Eizenga ▴ 460
1
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0
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1.2k
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Answer: Answer: need interpretations for the vg call output
6 months ago by Jordan M Eizenga ▴ 460
0
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1
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796
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Comment: Comment: Lack of correspondance of GFA node IDs to giraffe/call node IDs
7 months ago by Jordan M Eizenga ▴ 460
1
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0
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701
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Comment: Comment: Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pa
7 months ago by Jordan M Eizenga ▴ 460
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0
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478
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Answer: Answer: Interpretation question regarding vg call result vcf
7 months ago by Jordan M Eizenga ▴ 460
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0
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562
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Comment: Comment: HiFi read alignment with vg giraffe
7 months ago by Jordan M Eizenga ▴ 460
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0
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545
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Comment: Comment: Bug of vg surject
7 months ago by Jordan M Eizenga ▴ 460
0
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1
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545
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Comment: Comment: Bug of vg surject
7 months ago by Jordan M Eizenga ▴ 460
0
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0
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451
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Comment: Comment: Identify parent of each read in a GAF
7 months ago by Jordan M Eizenga ▴ 460
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0
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527
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Comment: Comment: vg rna pantranscriptome
8 months ago by Jordan M Eizenga ▴ 460
0
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1
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1.4k
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Comment: Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
8 months ago by Jordan M Eizenga ▴ 460
0
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1
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2.4k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
0
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1
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2.4k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
0
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0
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2.4k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by Jordan M Eizenga ▴ 460
0
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2
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1.4k
views
Comment: Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
8 months ago by Jordan M Eizenga ▴ 460
2
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1
reply
1.4k
views
Comment: Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
8 months ago by Jordan M Eizenga ▴ 460
1
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1
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598
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Comment: Comment: VG node not present in graph
8 months ago by Jordan M Eizenga ▴ 460
1
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0
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1.2k
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Answer: Answer: Is there a 1000GP pangenome available?
8 months ago by Jordan M Eizenga ▴ 460
0
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2
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2.4k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
9 months ago by Jordan M Eizenga ▴ 460
0
votes
2
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2.4k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
9 months ago by Jordan M Eizenga ▴ 460
0
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1
reply
2.4k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
9 months ago by Jordan M Eizenga ▴ 460
0
votes
1
reply
2.4k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
9 months ago by Jordan M Eizenga ▴ 460
0
votes
1
reply
2.4k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
9 months ago by Jordan M Eizenga ▴ 460
0
votes
1
reply
2.4k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
9 months ago by Jordan M Eizenga ▴ 460
0
votes
1
reply
2.4k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
9 months ago by Jordan M Eizenga ▴ 460
2
votes
0
replies
1.3k
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Comment: Comment: How to identify which genome the variations in the pan-genome graph originate fr
9 months ago by Jordan M Eizenga ▴ 460
0
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0
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820
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Comment: Comment: how to compare mapping of WES samples to human pangenome?
9 months ago by Jordan M Eizenga ▴ 460
1
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2
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820
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Comment: Comment: how to compare mapping of WES samples to human pangenome?
9 months ago by Jordan M Eizenga ▴ 460
1
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0
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1.3k
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Comment: Comment: How to identify which genome the variations in the pan-genome graph originate fr
9 months ago by Jordan M Eizenga ▴ 460
1
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1
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1.4k
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Comment: Comment: VG Giraffe multi-mapped reads and definition for MAPQ score
9 months ago by Jordan M Eizenga ▴ 460
1
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0
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2.5k
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Comment: Comment: SV calling using giraffe/vg
9 months ago by Jordan M Eizenga ▴ 460
0
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2
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1.4k
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Comment: Comment: VG Giraffe multi-mapped reads and definition for MAPQ score
10 months ago by Jordan M Eizenga ▴ 460
0
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0
replies
1.0k
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Comment: Comment: vg map time consuming
10 months ago by Jordan M Eizenga ▴ 460
0
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1
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873
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Comment: Comment: Substantial reduction in read mapping following VG surject
10 months ago by Jordan M Eizenga ▴ 460
2
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1
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1.0k
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Answer: Answer: Indexing the human pangenome draft
10 months ago by Jordan M Eizenga ▴ 460
1
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0
replies
1.0k
views
Comment: Comment: Indexing the human pangenome draft
10 months ago by Jordan M Eizenga ▴ 460
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