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Answer: Answer: vg gbwt missing sample and haplotype metadata when created using minigraph-cactu
5 weeks ago by Jouni Sirén ▴ 760
2
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1.1k
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Comment: Comment: Best practice to merge per sample variant calls from personalized pangenomes
8 weeks ago by Jouni Sirén ▴ 760
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1.1k
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Answer: Answer: Best practice to merge per sample variant calls from personalized pangenomes
9 weeks ago by Jouni Sirén ▴ 760
2
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2
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743
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Answer: Answer: [VG sim, surject, giraffe] How to remove a sample from GFA/GBZ graph
10 weeks ago by Jouni Sirén ▴ 760
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529
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Answer: Answer: how to merge gbz files
11 weeks ago by Jouni Sirén ▴ 760
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825
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Answer: Answer: Does vg giraffe output secondary and supplimentary alignments?
5 months ago by Jouni Sirén ▴ 760
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722
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Answer: Answer: Question about `vg construct`
6 months ago by Jouni Sirén ▴ 760
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888
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Answer: Answer: Issues with vg surject into paths
6 months ago by Jouni Sirén ▴ 760
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Answer: Answer: Question about `vg giraffe`
6 months ago by Jouni Sirén ▴ 760
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1.1k
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Comment: Comment: GBWT Construction Error: "Sources X and Y both have node Z" When Building GBZ fr
6 months ago by Jouni Sirén ▴ 760
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1.1k
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Comment: Comment: GBWT Construction Error: "Sources X and Y both have node Z" When Building GBZ fr
6 months ago by Jouni Sirén ▴ 760
1
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1
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1.1k
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Answer: Answer: GBWT Construction Error: "Sources X and Y both have node Z" When Building GBZ fr
6 months ago by Jouni Sirén ▴ 760
2
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1
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976
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Answer: Answer: How do I figure out pangenome location of hg38 coordinates?
6 months ago by Jouni Sirén ▴ 760
2
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564
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Answer: Answer: Query Regarding Missing Sample Paths in Graph-Based Pangenome Construction
7 months ago by Jouni Sirén ▴ 760
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1
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772
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Comment: Comment: Whether personalized pangenome considers allele frequency
7 months ago by Jouni Sirén ▴ 760
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1
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772
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Answer: Answer: Whether personalized pangenome considers allele frequency
7 months ago by Jouni Sirén ▴ 760
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1
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576
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Comment: Comment: Unexpected behavior of `vg surject`
7 months ago by Jouni Sirén ▴ 760
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1.1k
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Comment: Comment: Parameter Settings for Haplotype-Aware Aligner
10 months ago by Jouni Sirén ▴ 760
3
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1.1k
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Answer: Answer: Parameter Settings for Haplotype-Aware Aligner
10 months ago by Jouni Sirén ▴ 760
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666
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Answer: Answer: Gam format specification
10 months ago by Jouni Sirén ▴ 760
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1.9k
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Comment: Comment: Question about variant calling method using pangenome-graph
10 months ago by Jouni Sirén ▴ 760
3
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1
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1.4k
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Answer: Answer: Query about vg (and vg giraffe) for pangenome creation and VC
12 months ago by Jouni Sirén ▴ 760
2
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0
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896
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Answer: Answer: which haplotypes were saved in .gbz file?
13 months ago by Jouni Sirén ▴ 760
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1
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1.6k
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Comment: Comment: What path list should be used to surject GAM to GRCh38/CHM13 reference genome
15 months ago by Jouni Sirén ▴ 760
2
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1
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1.6k
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Answer: Answer: What path list should be used to surject GAM to GRCh38/CHM13 reference genome
15 months ago by Jouni Sirén ▴ 760
3
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1
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1.2k
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Answer: Answer: vg autoindex seems stuck after a week of running
16 months ago by Jouni Sirén ▴ 760
2
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1
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1.0k
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Answer: Answer: How to parallelize running vg autoindex to create graph references from VCFs wit
19 months ago by Jouni Sirén ▴ 760
2
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1
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1.2k
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Answer: Answer: Regarding the node length requirements for using gfa files in vg giraffe
21 months ago by Jouni Sirén ▴ 760
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1
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2.6k
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Comment: Comment: build error with vg tools
2.2 years ago by Jouni Sirén ▴ 760
1
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2.3k
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Comment: Comment: warning[vg::Watchdog]
2.3 years ago by Jouni Sirén ▴ 760
1
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0
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1.6k
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Answer: Answer: Constructing a vg graph from MSA with a large number of sequences
3.7 years ago by Jouni Sirén ▴ 760
1
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0
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1.6k
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Answer: Answer: vg tools, I ran vg autoindex -w giraffe and use splited vcf file (multi vcf file
3.8 years ago by Jouni Sirén ▴ 760
2
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1
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1.8k
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Answer: Answer: I ran autoindex giraffe of vg tools , Step : Constructing a greedy path cover GB
3.8 years ago by Jouni Sirén ▴ 760
1
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0
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3.6k
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Comment: Comment: Creating a variation graph for Giraffe alignment from assemblies
4.1 years ago by Jouni Sirén ▴ 760
3
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1
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3.6k
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Answer: Answer: Creating a variation graph for Giraffe alignment from assemblies
4.1 years ago by Jouni Sirén ▴ 760
2
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1
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1.5k
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Answer: Answer: VG Installation with Ubuntu
4.2 years ago by Jouni Sirén ▴ 760
2
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0
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3.3k
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Answer: Answer: How to run vg giraffe for sv genotyping?
4.2 years ago by Jouni Sirén ▴ 760
0
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1
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1.8k
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Comment: Comment: Issue with memory and the gcsa index in toil-vg
4.3 years ago by Jouni Sirén ▴ 760
1
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0
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1.7k
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Answer: A: vg index memory allocation
4.8 years ago by Jouni Sirén ▴ 760
0
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2
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1.9k
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Answer: A: In 'vg construct', is it possible to have the variant paths be labeled with sam
4.8 years ago by Jouni Sirén ▴ 760
2
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0
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2.2k
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Answer: A: Issues calling variants with vg when using other tools upstream
4.8 years ago by Jouni Sirén ▴ 760
1
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0
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2.1k
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Answer: A: vg gam file statistics: how many reads are mapped
4.9 years ago by Jouni Sirén ▴ 760
1
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0
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2.3k
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Answer: A: vg path associated with sample name
4.9 years ago by Jouni Sirén ▴ 760
3
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1.3k
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Answer: A: Best way to obtain reference and non-reference k-mer
5.2 years ago by Jouni Sirén ▴ 760
2
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1
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1.6k
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Answer: A: Vg gamsort temporary folder
5.2 years ago by Jouni Sirén ▴ 760
2
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0
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2.1k
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Answer: A: Extract linear representation of paths in VG graph
5.5 years ago by Jouni Sirén ▴ 760
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0
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1.8k
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Comment: C: More haplotype threads than expected
5.7 years ago by Jouni Sirén ▴ 760
3
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0
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1.6k
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Answer: A: Error in vg : vg Assertion `reference_for.count(fasta_contig)' failed.
5.8 years ago by Jouni Sirén ▴ 760
2
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0
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1.6k
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Answer: A: How much memory do we need for pruning a variation graph of a chromosome?
6.0 years ago by Jouni Sirén ▴ 760
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