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247
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Answer:
Answer: Whether personalized pangenome considers allele frequency
2 days ago by
Jouni Sirén
▴ 510
0
votes
1
reply
212
views
Comment:
Comment: Unexpected behavior of `vg surject`
4 days ago by
Jouni Sirén
▴ 510
1
vote
1
reply
618
views
Comment:
Comment: Parameter Settings for Haplotype-Aware Aligner
9 weeks ago by
Jouni Sirén
▴ 510
3
votes
1
reply
618
views
Answer:
Answer: Parameter Settings for Haplotype-Aware Aligner
9 weeks ago by
Jouni Sirén
▴ 510
2
votes
0
replies
327
views
Answer:
Answer: Gam format specification
11 weeks ago by
Jouni Sirén
▴ 510
0
votes
0
replies
800
views
Comment:
Comment: Question about variant calling method using pangenome-graph
11 weeks ago by
Jouni Sirén
▴ 510
3
votes
1
reply
710
views
Answer:
Answer: Query about vg (and vg giraffe) for pangenome creation and VC
4 months ago by
Jouni Sirén
▴ 510
2
votes
0
replies
520
views
Answer:
Answer: which haplotypes were saved in .gbz file?
5 months ago by
Jouni Sirén
▴ 510
1
vote
1
reply
886
views
Comment:
Comment: What path list should be used to surject GAM to GRCh38/CHM13 reference genome
7 months ago by
Jouni Sirén
▴ 510
1
vote
1
reply
886
views
Answer:
Answer: What path list should be used to surject GAM to GRCh38/CHM13 reference genome
7 months ago by
Jouni Sirén
▴ 510
2
votes
1
reply
672
views
Answer:
Answer: vg autoindex seems stuck after a week of running
8 months ago by
Jouni Sirén
▴ 510
2
votes
1
reply
635
views
Answer:
Answer: How to parallelize running vg autoindex to create graph references from VCFs wit
11 months ago by
Jouni Sirén
▴ 510
2
votes
1
reply
685
views
Answer:
Answer: Regarding the node length requirements for using gfa files in vg giraffe
13 months ago by
Jouni Sirén
▴ 510
0
votes
1
reply
1.9k
views
Comment:
Comment: build error with vg tools
19 months ago by
Jouni Sirén
▴ 510
1
vote
0
replies
1.6k
views
Comment:
Comment: warning[vg::Watchdog]
19 months ago by
Jouni Sirén
▴ 510
1
vote
0
replies
1.3k
views
Answer:
Answer: Constructing a vg graph from MSA with a large number of sequences
3.1 years ago by
Jouni Sirén
▴ 510
1
vote
0
replies
1.3k
views
Answer:
Answer: vg tools, I ran vg autoindex -w giraffe and use splited vcf file (multi vcf file
3.1 years ago by
Jouni Sirén
▴ 510
2
votes
1
reply
1.5k
views
Answer:
Answer: I ran autoindex giraffe of vg tools , Step : Constructing a greedy path cover GB
3.1 years ago by
Jouni Sirén
▴ 510
1
vote
0
replies
2.2k
views
Comment:
Comment: Creating a variation graph for Giraffe alignment from assemblies
3.5 years ago by
Jouni Sirén
▴ 510
3
votes
1
reply
2.2k
views
Answer:
Answer: Creating a variation graph for Giraffe alignment from assemblies
3.5 years ago by
Jouni Sirén
▴ 510
2
votes
1
reply
1.2k
views
Answer:
Answer: VG Installation with Ubuntu
3.5 years ago by
Jouni Sirén
▴ 510
2
votes
0
replies
2.6k
views
Answer:
Answer: How to run vg giraffe for sv genotyping?
3.6 years ago by
Jouni Sirén
▴ 510
0
votes
1
reply
1.5k
views
Comment:
Comment: Issue with memory and the gcsa index in toil-vg
3.7 years ago by
Jouni Sirén
▴ 510
1
vote
0
replies
1.4k
views
Answer:
A: vg index memory allocation
4.1 years ago by
Jouni Sirén
▴ 510
0
votes
2
replies
1.5k
views
Answer:
A: In 'vg construct', is it possible to have the variant paths be labeled with sam
4.2 years ago by
Jouni Sirén
▴ 510
2
votes
0
replies
1.7k
views
Answer:
A: Issues calling variants with vg when using other tools upstream
4.2 years ago by
Jouni Sirén
▴ 510
1
vote
0
replies
1.7k
views
Answer:
A: vg gam file statistics: how many reads are mapped
4.3 years ago by
Jouni Sirén
▴ 510
1
vote
0
replies
1.9k
views
Answer:
A: vg path associated with sample name
4.3 years ago by
Jouni Sirén
▴ 510
3
votes
1
reply
984
views
Answer:
A: Best way to obtain reference and non-reference k-mer
4.6 years ago by
Jouni Sirén
▴ 510
2
votes
1
reply
1.3k
views
Answer:
A: Vg gamsort temporary folder
4.6 years ago by
Jouni Sirén
▴ 510
2
votes
0
replies
1.7k
views
Answer:
A: Extract linear representation of paths in VG graph
4.9 years ago by
Jouni Sirén
▴ 510
0
votes
0
replies
1.4k
views
Comment:
C: More haplotype threads than expected
5.1 years ago by
Jouni Sirén
▴ 510
3
votes
0
replies
1.4k
views
Answer:
A: Error in vg : vg Assertion `reference_for.count(fasta_contig)' failed.
5.2 years ago by
Jouni Sirén
▴ 510
2
votes
0
replies
1.3k
views
Answer:
A: How much memory do we need for pruning a variation graph of a chromosome?
5.4 years ago by
Jouni Sirén
▴ 510
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