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Comment: C: HDF5-DIAG: Error in using dsk
4.6 years ago by Rayan Chikhi ★ 1.6k
3
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0
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1.8k
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Answer: A: ENA and SRA fastq files
4.7 years ago by Rayan Chikhi ★ 1.6k
3
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0
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1.8k
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Answer: A: K-mer usage in metagenome assemblies
4.7 years ago by Rayan Chikhi ★ 1.6k
27
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8
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6.4k
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6 follow
Blog: Fast kmer reverse complement code using bit tricks
kmer code reverse-complement gatb
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 1.6k
1
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5.9k
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Answer: A: No could not fit >15 [Assemblied by SOAPdenovo]
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 1.6k
0
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1
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5.9k
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Comment: C: No could not fit >15 [Assemblied by SOAPdenovo]
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 1.6k
0
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1
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9.3k
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Answer: A: Larger-Than-Expected Total Scaffolds Size Using Nextera Mate Pairs
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 1.6k
1
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0
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38k
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Answer: A: Estimating Insert Size From Paired End Data.
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 1.6k
1
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0
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3.4k
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Answer: A: Method used for reducing contigs IonTorrant 400bp [unpaired] (critique/ways to i
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 1.6k
2
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0
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2.7k
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Answer: A: assembly methods and approches
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 1.6k
0
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1
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18k
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Comment: C: Biostar 2.0 released
updated 5.7 years ago by 45k • written 11.4 years ago by ★ 1.6k
0
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1
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5.6k
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Comment: C: How would you write script to count all kmers to estimate the genome size, simil
updated 5.8 years ago by 45k • written 9.8 years ago by ★ 1.6k
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0
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3.0k
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Comment: C: Where does Kmergenie get it's y axis numbers from? Is it suppose to be the local
updated 5.8 years ago by 45k • written 9.8 years ago by ★ 1.6k
0
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0
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2.5k
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Answer: A: kmer for sample list
updated 5.8 years ago by 45k • written 9.8 years ago by ★ 1.6k
0
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1
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3.9k
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Comment: C: DiscoSNP++ 2.2.0 Segmentation Fault
updated 5.8 years ago by 45k • written 10.0 years ago by ★ 1.6k
0
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1
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2.4k
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Answer: A: Problems trying to run simple_test in linux binary distribution
updated 5.8 years ago by 45k • written 10.1 years ago by ★ 1.6k
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0
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5.3k
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Comment: C: Problem: kmergenie has a minimum number of input of reads?
updated 5.9 years ago by 45k • written 10.6 years ago by ★ 1.6k
0
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2
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5.3k
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Comment: C: Problem: kmergenie has a minimum number of input of reads?
updated 5.9 years ago by 45k • written 10.6 years ago by ★ 1.6k
0
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0
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5.3k
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Comment: C: Problem: kmergenie has a minimum number of input of reads?
updated 5.9 years ago by 45k • written 10.6 years ago by ★ 1.6k
0
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0
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9.3k
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Comment: C: Larger-Than-Expected Total Scaffolds Size Using Nextera Mate Pairs
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.6k
0
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1
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9.3k
views
Comment: C: Larger-Than-Expected Total Scaffolds Size Using Nextera Mate Pairs
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.6k
0
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2
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9.3k
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Answer: A: Larger-Than-Expected Total Scaffolds Size Using Nextera Mate Pairs
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.6k
0
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1
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1.7k
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Comment: C: GATB-core kmer couting
6.2 years ago by Rayan Chikhi ★ 1.6k
3
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1
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1.7k
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Answer: A: GATB-core kmer couting
6.2 years ago by Rayan Chikhi ★ 1.6k
0
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0
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11k
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Comment: C: Back Translating Protein Sequence Without Ambiguities...
updated 6.3 years ago by 45k • written 6.6 years ago by ★ 1.6k
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0
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1.8k
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Answer: A: Segmentation fault when running Minia v3 with some kmer values
7.1 years ago by Rayan Chikhi ★ 1.6k
1
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1
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1.8k
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Comment: C: GATB buildNode giving errors
7.1 years ago by Rayan Chikhi ★ 1.6k
2
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2
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1.8k
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Answer: A: GATB buildNode giving errors
7.2 years ago by Rayan Chikhi ★ 1.6k
1
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0
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6.6k
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Comment: C: Want to use fastq-dump to download pacbio data? Read this before
7.3 years ago by Rayan Chikhi ★ 1.6k
2
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0
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4.4k
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Answer: A: Hybrid assembly using MinION data + correction with Illumina. Which strategy to
7.4 years ago by Rayan Chikhi ★ 1.6k
6
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1
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6.6k
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Comment: C: Want to use fastq-dump to download pacbio data? Read this before
7.4 years ago by Rayan Chikhi ★ 1.6k
0
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0
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2.6k
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Comment: C: Minia assembler restart after error?
7.6 years ago by Rayan Chikhi ★ 1.6k
0
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1
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2.6k
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Comment: C: Minia assembler restart after error?
7.6 years ago by Rayan Chikhi ★ 1.6k
3
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1
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2.6k
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Answer: A: Minia assembler restart after error?
7.6 years ago by Rayan Chikhi ★ 1.6k
0
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0
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2.5k
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Answer: A: Is there any plant-specific genome assembler?
7.8 years ago by Rayan Chikhi ★ 1.6k
0
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0
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1.9k
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Answer: A: GATB-minia-pipelne fails at bloocoo step
updated 7.8 years ago by 45k • written 7.8 years ago by ★ 1.6k
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0
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1.8k
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Answer: A: importing a GFA2 scaffold graph
7.8 years ago by Rayan Chikhi ★ 1.6k
2
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0
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1.6k
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Answer: A: GATB - Multithreaded iteration of paired banks ?
7.8 years ago by Rayan Chikhi ★ 1.6k
1
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0
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2.0k
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Answer: A: compiling gatb-core with external Boost and hdf5
8.0 years ago by Rayan Chikhi ★ 1.6k
0
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0
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2.3k
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Comment: C: Minia stuck - I don't know if my routine is still running
8.1 years ago by Rayan Chikhi ★ 1.6k
0
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0
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1.8k
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Answer: A: Error: MPHF is not injective in Minia
8.1 years ago by Rayan Chikhi ★ 1.6k
0
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0
replies
1.7k
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Answer: A: Does Minia discard singletons?
8.1 years ago by Rayan Chikhi ★ 1.6k
2
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0
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4.5k
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Comment: C: What's a good PacBio CLR read simulator?
8.5 years ago by Rayan Chikhi ★ 1.6k
0
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1
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1.9k
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Comment: C: One Sided Contig Extension
8.5 years ago by Rayan Chikhi ★ 1.6k
0
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0
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2.7k
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Answer: A: Kmergenie fails to fit models with --diploid settings
8.6 years ago by Rayan Chikhi ★ 1.6k
0
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0
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4.5k
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Answer: A: Kmergenie k-mer estimate and multiple k-mers
8.6 years ago by Rayan Chikhi ★ 1.6k
0
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0
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4.1k
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Comment: C: compiling kmergenie 1.7038. Is it possible?
8.6 years ago by Rayan Chikhi ★ 1.6k
1
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0
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4.1k
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Answer: A: compiling kmergenie 1.7038. Is it possible?
8.6 years ago by Rayan Chikhi ★ 1.6k
0
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0
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3.3k
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Answer: A: kmergenie Installation failed. seems got a bug
8.6 years ago by Rayan Chikhi ★ 1.6k
0
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0
replies
3.2k
views
Comment: C: No best K value found
8.6 years ago by Rayan Chikhi ★ 1.6k
222 results • Page 1 of 5
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