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Answer: Answer: Limma package: explanation makeContrasts examples
updated 2.5 years ago by 45k • written 9.8 years ago by ★ 4.3k
2
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1
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4.7k
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Answer: A: Normalization of DNase-seq samples with globally different chromatin structures
9.8 years ago by Ying W ★ 4.3k
4
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1
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27k
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Answer: A: Run multiple fastq.gz files with FastQC and yield single report?
9.8 years ago by Ying W ★ 4.3k
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1
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2.0k
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Answer: A: Can we call a protein under undergone ChIP as ChIP'd protein? Is it formal?
9.8 years ago by Ying W ★ 4.3k
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2.0k
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Answer: Answer: QC of ChIPseq data (controlling false negatives)
updated 2.4 years ago by 45k • written 9.8 years ago by ★ 4.3k
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3.3k
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Comment: C: Is there any differnce between using biomaRt package under R to retrieve gene in
9.8 years ago by Ying W ★ 4.3k
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1
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3.3k
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Comment: C: Is there any differnce between using biomaRt package under R to retrieve gene in
9.8 years ago by Ying W ★ 4.3k
1
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1
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3.3k
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Answer: A: Is there any differnce between using biomaRt package under R to retrieve gene in
9.8 years ago by Ying W ★ 4.3k
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7.9k
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Comment: C: Tumor clonality algorithms
9.8 years ago by Ying W ★ 4.3k
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1
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2.8k
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Answer: A: Strucutral Variant analysis in WES
9.9 years ago by Ying W ★ 4.3k
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3.8k
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Comment: C: How to produce a hom/het snp frequency table
9.9 years ago by Ying W ★ 4.3k
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0
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7.6k
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Comment: C: How to handle chr Y data in BAM files from exome sequencing of human females
9.9 years ago by Ying W ★ 4.3k
1
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1
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3.8k
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Comment: C: Named variants to Rsids or coordinates or Haplotype?
9.9 years ago by Ying W ★ 4.3k
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0
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3.3k
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Answer: A: Problems in plotting phylogenetic tree and principal component analysis
9.9 years ago by Ying W ★ 4.3k
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0
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29k
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Comment: C: hg19 vs hg38 in two pictures
9.9 years ago by Ying W ★ 4.3k
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5.5k
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Comment: C: Sliding Window for CNV Analysis
9.9 years ago by Ying W ★ 4.3k
1
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1
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3.8k
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Answer: Answer: How to produce a hom/het snp frequency table
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
2
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2
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7.6k
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Comment: C: How to handle chr Y data in BAM files from exome sequencing of human females
9.9 years ago by Ying W ★ 4.3k
7
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1
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5.5k
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Answer: A: Sliding Window for CNV Analysis
9.9 years ago by Ying W ★ 4.3k
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0
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7.6k
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Comment: C: How to handle chr Y data in BAM files from exome sequencing of human females
9.9 years ago by Ying W ★ 4.3k
1
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0
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2.5k
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Answer: A: tabix query retruns multiple variants for a single position. Is it expected?
9.9 years ago by Ying W ★ 4.3k
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2
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7.6k
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Answer: Answer: How to handle chr Y data in BAM files from exome sequencing of human females
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
0
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1
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2.7k
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Comment: C: help: smartpca plot population shift problem
9.9 years ago by Ying W ★ 4.3k
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1
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3.8k
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Comment: C: How to produce a hom/het snp frequency table
9.9 years ago by Ying W ★ 4.3k
1
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1
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2.2k
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Answer: A: Regarding deleted SNPs (in dbSNP) due to mapping or clustering errors found in V
9.9 years ago by Ying W ★ 4.3k
1
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1
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3.0k
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Answer: A: What does this mean in my read (samtools)
9.9 years ago by Ying W ★ 4.3k
0
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1
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3.8k
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Answer: Answer: Named variants to Rsids or coordinates or Haplotype?
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
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0
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2.7k
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Comment: C: What is the difference between fine-mapping and targeted sequencing?
9.9 years ago by Ying W ★ 4.3k
3
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2.7k
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Answer: A: What is the difference between fine-mapping and targeted sequencing?
9.9 years ago by Ying W ★ 4.3k
0
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1
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3.4k
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Comment: Comment: ReadVCF not reading samples
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
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0
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2.9k
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Answer: A: Locate A SNP Number of Reads for Variance and References using Pysam
9.9 years ago by Ying W ★ 4.3k
0
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0
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6.4k
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Answer: Answer: gVCF from VCF and BAM
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
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1
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3.0k
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Comment: Comment: Quality scores in ICGC simple somatic mutation file
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
0
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1
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10k
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Comment: C: Samtools mpileup quality scores all zero
9.9 years ago by Ying W ★ 4.3k
0
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1
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10k
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Comment: C: Samtools mpileup quality scores all zero
9.9 years ago by Ying W ★ 4.3k
0
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1
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3.0k
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Answer: Answer: Quality scores in ICGC simple somatic mutation file
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
1
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0
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3.1k
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Answer: A: ICGC/TCGA clinical data. Specimen_interval longer than donor survival time?
9.9 years ago by Ying W ★ 4.3k
3
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1
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26k
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Comment: Comment: Bioinformatics courses, workshops or training
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
1
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1
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2.0k
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Comment: C: mitochondrial variants in familial disease
9.9 years ago by Ying W ★ 4.3k
0
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1
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10k
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Answer: Answer: Samtools mpileup quality scores all zero
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
1
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0
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3.6k
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Comment: Comment: Cost of computing
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
1
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1
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10k
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Comment: C: Samtools mpileup quality scores all zero
9.9 years ago by Ying W ★ 4.3k
1
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1
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2.0k
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Answer: A: mitochondrial variants in familial disease
9.9 years ago by Ying W ★ 4.3k
1
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1
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4.2k
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Comment: C: Comparing TMM and RSEM RNASeq data
9.9 years ago by Ying W ★ 4.3k
1
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1
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4.2k
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Answer: A: Comparing TMM and RSEM RNASeq data
9.9 years ago by Ying W ★ 4.3k
2
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0
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6.1k
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Answer: A: insert figure and code in the post of Biostars?
9.9 years ago by Ying W ★ 4.3k
1
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0
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3.9k
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Comment: Comment: Matching Gencode annotations to Assemblies
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 4.3k
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0
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4.2k
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Comment: C: Illumina BeadChip Replicate Probes
10.1 years ago by Ying W ★ 4.3k
0
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0
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7.9k
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Comment: C: Distribution Of Gene Size
10.1 years ago by Ying W ★ 4.3k
1
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1
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3.9k
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Comment: C: What is the correct way to use GNU parallel with Primer3?
10.1 years ago by Ying W ★ 4.3k
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