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4.6k
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Answer: A: sam/bam file handling -> new tools?
8.7 years ago by Ying W ★ 4.2k
1
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1
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3.6k
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Answer: A: Illumina BeadChip Replicate Probes
8.7 years ago by Ying W ★ 4.2k
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0
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1.7k
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Comment: C: Unpacking reference file for Isaac Aligner
8.7 years ago by Ying W ★ 4.2k
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1
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4.3k
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Comment: Comment: problems in Diffbind In Creating Diffbind Object In R For Chip-Seq Peaks
updated 19 months ago by 41k • written 8.8 years ago by ★ 4.2k
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1.3k
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Comment: C: Stand alone Google Scholar profile
8.8 years ago by Ying W ★ 4.2k
2
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2
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6.6k
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Answer: A: Convert GVF to VCF
8.8 years ago by Ying W ★ 4.2k
2
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1
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7.2k
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Comment: Comment: Best Practices For Using Fimo For Motif Scanning
updated 20 months ago by 41k • written 8.8 years ago by ★ 4.2k
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2.8k
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Answer: A: representation of chipseq and RNA-seq data
9.0 years ago by Ying W ★ 4.2k
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0
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11k
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Comment: C: p-value or adjusted p-value?
9.0 years ago by Ying W ★ 4.2k
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0
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9.7k
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Comment: C: What statistical test does DESeq use?
9.0 years ago by Ying W ★ 4.2k
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0
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5.1k
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Comment: Comment: Fast generation of random scale-free networks with a defined power law using R
updated 22 months ago by 41k • written 9.0 years ago by ★ 4.2k
10
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2
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9.7k
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Answer: Answer: What statistical test does DESeq use?
updated 21 months ago by 41k • written 9.0 years ago by ★ 4.2k
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0
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1.5k
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Comment: C: What tool should I use to compare biological reps
9.0 years ago by Ying W ★ 4.2k
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0
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2.4k
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Comment: C: Merging multiplexed bam files
9.0 years ago by Ying W ★ 4.2k
5
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1
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8.6k
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Answer: A: Difference between various GRCH 37 releases?
9.0 years ago by Ying W ★ 4.2k
0
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1
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4.3k
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Comment: C: tag density v.s. binding affinity v.s. signal value
9.0 years ago by Ying W ★ 4.2k
1
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1
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4.3k
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Answer: Answer: tag density v.s. binding affinity v.s. signal value
updated 21 months ago by 41k • written 9.0 years ago by ★ 4.2k
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0
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3.4k
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Answer: A: TCGA data looks different on ICGC
9.0 years ago by Ying W ★ 4.2k
1
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0
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4.9k
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Comment: C: Transcription Factor Binding Sites
9.0 years ago by Ying W ★ 4.2k
0
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1
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2.4k
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Comment: C: Merging multiplexed bam files
9.0 years ago by Ying W ★ 4.2k
5
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0
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10k
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Answer: Answer: Comparing two ChIP-seq libraries
updated 21 months ago by 41k • written 9.0 years ago by ★ 4.2k
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0
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3.5k
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Comment: C: 12.2% of protein coding transcripts in GRCh38.cds.all.fa (from Ensembl db) don't
9.0 years ago by Ying W ★ 4.2k
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0
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2.2k
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Answer: A: calling 1000G SNPs/indels from ngs data (chipseq or other source)
9.0 years ago by Ying W ★ 4.2k
1
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0
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2.8k
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Answer: A: Which journal do you frequently read/recommend for reviews/updates in computatio
9.0 years ago by Ying W ★ 4.2k
2
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1
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24k
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Comment: C: Genomics is not Special. Computational Biologist are reinventing the wheel for b
9.0 years ago by Ying W ★ 4.2k
0
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1
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7.4k
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Answer: A: What is trace in R's heatmap.2 function?
9.0 years ago by Ying W ★ 4.2k
1
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0
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2.6k
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Answer: A: Chip-seq common control for two treatments
9.0 years ago by Ying W ★ 4.2k
0
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0
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3.0k
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Comment: C: Next maSigPro time course packages input problems ??
9.0 years ago by Ying W ★ 4.2k
2
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0
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13k
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Comment: C: Tutorial (How to analyze) on Whole Exome sequencing. Common Errors. Best Practic
9.0 years ago by Ying W ★ 4.2k
2
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0
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2.0k
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Comment: Comment: How to download a large amount of NGS metadata for studies?
updated 21 months ago by 41k • written 9.0 years ago by ★ 4.2k
1
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0
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4.9k
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Comment: Comment: How to download a specific sample from TCGA ?
updated 2.7 years ago by 41k • written 9.1 years ago by ★ 4.2k
2
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0
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2.6k
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Comment: Comment: How to visualize reads at per base position for a SNP
updated 23 months ago by 41k • written 9.2 years ago by ★ 4.2k
1
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1
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8.9k
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Comment: C: Seqlogo and Homer
9.2 years ago by Ying W ★ 4.2k
1
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0
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14k
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Comment: Comment: ChIP-Seq: Calling peaks with replicates
updated 23 months ago by 41k • written 9.2 years ago by ★ 4.2k
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1
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2.0k
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Comment: C: Installation of SubcloneSeeker
9.2 years ago by Ying W ★ 4.2k
4
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1
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8.9k
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Answer: A: Seqlogo and Homer
9.2 years ago by Ying W ★ 4.2k
3
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0
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5.7k
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Answer: A: How can I programmatically download the GEO DataSets of a given accession?
9.2 years ago by Ying W ★ 4.2k
2
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0
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4.5k
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Answer: A: chipseq data normalization
9.5 years ago by Ying W ★ 4.2k
0
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0
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9.6k
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Comment: C: gffread is not working
9.6 years ago by Ying W ★ 4.2k
1
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1
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5.0k
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Answer: A: Which kind of microRNAs expression are measured in TCGA?
9.6 years ago by Ying W ★ 4.2k
0
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0
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3.4k
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Comment: C: Illumina Microarray Annotation
9.6 years ago by Ying W ★ 4.2k
1
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1
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3.4k
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Answer: A: Illumina Microarray Annotation
9.6 years ago by Ying W ★ 4.2k
1
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1
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3.1k
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Comment: C: What Happened To The Automotif Server?
9.6 years ago by Ying W ★ 4.2k
2
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2
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7.5k
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Answer: A: WGCNA with time series data
9.6 years ago by Ying W ★ 4.2k
1
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0
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1.5k
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Comment: C: Does Anyone Know Where To Find Treearrange?
9.8 years ago by Ying W ★ 4.2k
1
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1
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3.7k
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Answer: A: Constructing Compute Resources In Support Of Ngs In A Hospital Setting
9.8 years ago by Ying W ★ 4.2k
0
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0
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1.9k
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Comment: C: Is There A High Quality Genome Build For Saccharomyces Cerevisiae Sk1
9.8 years ago by Ying W ★ 4.2k
0
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0
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2.5k
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Answer: A: Mat Algorithm Score For Chip Chip Data
9.8 years ago by Ying W ★ 4.2k
1
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0
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4.2k
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Answer: A: Meaning Of Negative Values In Wig File?
9.8 years ago by Ying W ★ 4.2k
0
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0
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81k
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Comment: Comment: Piping With Samtools, Bwa And Bedtools
updated 20 months ago by 41k • written 9.8 years ago by ★ 4.2k
321 results • Page 3 of 7
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