User: Irsan
Irsan • 7.2k
- Reputation:
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- Amsterdam
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- Last seen:
- 1 week ago
- Joined:
- 8 years, 1 month ago
- Email:
- i**********@gmail.com
PhD-student at Clinical Genetics, VU medical centre
Posts by Irsan
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1
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... Please have a look at [this post][1]
[1]: https://www.biostars.org/p/83901/ ...
written 16 days ago by
Irsan • 7.2k
2
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138
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... I'd like to use the canu assembler to assembly my diploid organisms sequenced with MinION. Instead of smashing heterozygous sites to a single allele, I want canu to retain both alleles in the assembled sequenced. I am aware that I will therefore end up with a redundant assembly where each contig wil ...
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... Hi Geraldine (I think??), How do I make the cromwell server machine recognize the client/submission machine's file system? For example, do you recommend to to make my data directory on the client shareable over the network (SMB/CIFS), or can I adapt the URI string in my input file to something that ...
written 5 months ago by
Irsan • 7.2k
0
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... I make use of cromwell in server mode to execute bioinformatics data processing pipelines written in widdle (.wdl = workflow description language). The machine from which I submit workflows is not the same as the machine that hosts the cromwell server (so a remote cromwell server). The input files f ...
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2
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... From now, 2 places left! Just signed up for the course. Looks promising! ...
written 3.8 years ago by
Irsan • 7.2k
1
vote
10
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92k
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10
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Comment:
C: Fastq Convert To Fasta
... OK, I have changed fasta to fastq ...
written 4.0 years ago by
Irsan • 7.2k
0
votes
2
answers
1.4k
views
2
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Answer:
A: Heatmap trouble in R
... Because it scales the data. Use the scale="none" option ...
written 4.0 years ago by
Irsan • 7.2k
0
votes
6
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2.4k
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6
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... Oh yeah that's right, forgot about that... ...
written 4.1 years ago by
Irsan • 7.2k
1
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1
answer
2.0k
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1
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... I would advice against it. Becuase of the three dimensions, some bars can block others. ...
written 4.1 years ago by
Irsan • 7.2k
0
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6
answers
2.4k
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6
answers
... In research, micro-arrays are on their return but in clinical diagnostics they are still used a lot, in particular array-CGH or SNP-arrays to determine germ line CNVs that predispose to disease. ...
written 4.1 years ago by
Irsan • 7.2k
Latest awards to Irsan
Scholar
5 months ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Great Question
7 months ago,
created a question with more than 5,000 views.
For Disable Soft-Clipping Bwa Aln
Scholar
7 months ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Scholar
15 months ago,
created an answer that has been accepted.
For A: Why Cannot Limma Package Do Differential Expression Between Two Samples Without
Scholar
15 months ago,
created an answer that has been accepted.
For A: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
Scholar
15 months ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Cancer genomics journals
Scholar
15 months ago,
created an answer that has been accepted.
For A: Method to detect gene co-expression of genomic feature in cell lineage
Scholar
15 months ago,
created an answer that has been accepted.
For A: any tool or R package for integrated analysis of miRNA and mRNA expression data
Popular Question
18 months ago,
created a question with more than 1,000 views.
For Fastq Format Redundancy
Good Answer
2.8 years ago,
created an answer that was upvoted at least 5 times.
For A: Random Genomic Regions Of A Given Length Distribution
Good Answer
2.8 years ago,
created an answer that was upvoted at least 5 times.
For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Scholar
2.8 years ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Popular Question
2.9 years ago,
created a question with more than 1,000 views.
For Fastq Format Redundancy
Popular Question
2.9 years ago,
created a question with more than 1,000 views.
For Cancer genomics journals
Popular Question
3.1 years ago,
created a question with more than 1,000 views.
For Revolution (?) in CNA detection using exome/targeted sequencing
Popular Question
3.1 years ago,
created a question with more than 1,000 views.
For Fastq Format Redundancy
Good Answer
3.1 years ago,
created an answer that was upvoted at least 5 times.
For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Appreciated
3.1 years ago,
created a post with more than 5 votes.
For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Appreciated
3.1 years ago,
created a post with more than 5 votes.
For C: Conditional Coloring Of Heatmaps
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