User: Irsan
Irsan • 7.2k
- Reputation:
- 7,230
- Status:
- Trusted
- Location:
- Amsterdam
- Scholar ID:
- Google Scholar Page
- Last seen:
- 3 weeks, 6 days ago
- Joined:
- 8 years, 3 months ago
- Email:
- i**********@gmail.com
PhD-student at Clinical Genetics, VU medical centre
Posts by Irsan
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1
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... Please have a look at [this post][1]
[1]: https://www.biostars.org/p/83901/ ...
written 3 months ago by
Irsan • 7.2k
2
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218
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... I'd like to use the canu assembler to assembly my diploid organisms sequenced with MinION. Instead of smashing heterozygous sites to a single allele, I want canu to retain both alleles in the assembled sequenced. I am aware that I will therefore end up with a redundant assembly where each contig wil ...
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... Hi Geraldine (I think??), How do I make the cromwell server machine recognize the client/submission machine's file system? For example, do you recommend to to make my data directory on the client shareable over the network (SMB/CIFS), or can I adapt the URI string in my input file to something that ...
written 8 months ago by
Irsan • 7.2k
0
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... I make use of cromwell in server mode to execute bioinformatics data processing pipelines written in widdle (.wdl = workflow description language). The machine from which I submit workflows is not the same as the machine that hosts the cromwell server (so a remote cromwell server). The input files f ...
1
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2
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... From now, 2 places left! Just signed up for the course. Looks promising! ...
written 4.0 years ago by
Irsan • 7.2k
1
vote
10
answers
93k
views
10
answers
Comment:
C: Fastq Convert To Fasta
... OK, I have changed fasta to fastq ...
written 4.2 years ago by
Irsan • 7.2k
0
votes
2
answers
1.5k
views
2
answers
Answer:
A: Heatmap trouble in R
... Because it scales the data. Use the scale="none" option ...
written 4.3 years ago by
Irsan • 7.2k
0
votes
6
answers
2.5k
views
6
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... Oh yeah that's right, forgot about that... ...
written 4.3 years ago by
Irsan • 7.2k
1
vote
1
answer
2.1k
views
1
answers
... I would advice against it. Becuase of the three dimensions, some bars can block others. ...
written 4.3 years ago by
Irsan • 7.2k
0
votes
6
answers
2.5k
views
6
answers
... In research, micro-arrays are on their return but in clinical diagnostics they are still used a lot, in particular array-CGH or SNP-arrays to determine germ line CNVs that predispose to disease. ...
written 4.3 years ago by
Irsan • 7.2k
Latest awards to Irsan
Scholar
12 weeks ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Scholar
8 months ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Great Question
10 months ago,
created a question with more than 5,000 views.
For Disable Soft-Clipping Bwa Aln
Scholar
10 months ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Popular Question
18 months ago,
created a question with more than 1,000 views.
For Cancer genomics journals
Scholar
18 months ago,
created an answer that has been accepted.
For A: Why Cannot Limma Package Do Differential Expression Between Two Samples Without
Scholar
18 months ago,
created an answer that has been accepted.
For A: any tool or R package for integrated analysis of miRNA and mRNA expression data
Scholar
18 months ago,
created an answer that has been accepted.
For A: Method to detect gene co-expression of genomic feature in cell lineage
Scholar
18 months ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Scholar
18 months ago,
created an answer that has been accepted.
For A: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
Popular Question
21 months ago,
created a question with more than 1,000 views.
For Fastq Format Redundancy
Good Answer
3.0 years ago,
created an answer that was upvoted at least 5 times.
For A: Random Genomic Regions Of A Given Length Distribution
Good Answer
3.0 years ago,
created an answer that was upvoted at least 5 times.
For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Scholar
3.0 years ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Popular Question
3.1 years ago,
created a question with more than 1,000 views.
For Cancer genomics journals
Popular Question
3.1 years ago,
created a question with more than 1,000 views.
For Fastq Format Redundancy
Popular Question
3.4 years ago,
created a question with more than 1,000 views.
For Fastq Format Redundancy
Good Answer
3.4 years ago,
created an answer that was upvoted at least 5 times.
For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Appreciated
3.4 years ago,
created a post with more than 5 votes.
For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Appreciated
3.4 years ago,
created a post with more than 5 votes.
For C: Conditional Coloring Of Heatmaps
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