User: Irsan
Irsan • 7.2k
- Reputation:
- 7,180
- Status:
- Trusted
- Location:
- Amsterdam
- Scholar ID:
- Google Scholar Page
- Last seen:
- 4 weeks, 1 day ago
- Joined:
- 7 years, 10 months ago
- Email:
- i**********@gmail.com
PhD-student at Clinical Genetics, VU medical centre
Posts by Irsan
<prev
• 497 results •
page 1 of 50 •
next >
0
votes
1
answer
130
views
1
answers
... Hi Geraldine (I think??), How do I make the cromwell server machine recognize the client/submission machine's file system? For example, do you recommend to to make my data directory on the client shareable over the network (SMB/CIFS), or can I adapt the URI string in my input file to something that ...
written 3 months ago by
Irsan • 7.2k
0
votes
1
answer
130
views
1
answer
... I make use of cromwell in server mode to execute bioinformatics data processing pipelines written in widdle (.wdl = workflow description language). The machine from which I submit workflows is not the same as the machine that hosts the cromwell server (so a remote cromwell server). The input files f ...
1
vote
2
answers
1.3k
views
2
answers
... From now, 2 places left! Just signed up for the course. Looks promising! ...
written 3.5 years ago by
Irsan • 7.2k
1
vote
10
answers
90k
views
10
answers
Comment:
C: Fastq Convert To Fasta
... OK, I have changed fasta to fastq ...
written 3.8 years ago by
Irsan • 7.2k
0
votes
2
answers
1.4k
views
2
answers
Answer:
A: Heatmap trouble in R
... Because it scales the data. Use the scale="none" option ...
written 3.8 years ago by
Irsan • 7.2k
0
votes
6
answers
2.3k
views
6
answers
... Oh yeah that's right, forgot about that... ...
written 3.9 years ago by
Irsan • 7.2k
1
vote
1
answer
2.0k
views
1
answers
... I would advice against it. Becuase of the three dimensions, some bars can block others. ...
written 3.9 years ago by
Irsan • 7.2k
0
votes
6
answers
2.3k
views
6
answers
... In research, micro-arrays are on their return but in clinical diagnostics they are still used a lot, in particular array-CGH or SNP-arrays to determine germ line CNVs that predispose to disease. ...
written 3.9 years ago by
Irsan • 7.2k
2
votes
1
answer
5.0k
views
1
answers
... A sample for which you now the ploidy = 2. So any non-cancer sample would be fine. I think most of the time in a SNP-array run such a sample is included, for example a male and female reference DNA sample. It depends all on your research context but most of the time, best scenario is when you have a ...
written 4.1 years ago by
Irsan • 7.2k
1
vote
1
answer
5.0k
views
1
answers
... BAF = Y / (X + Y)
LRR = log2( (X + Y)sampleOfInterest / (X+Y)baselineSample)
But you might want to do some normalization first, possbily with beadstudio or with tQn normalization. See here http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-9-409 ...
written 4.1 years ago by
Irsan • 7.2k
Latest awards to Irsan
Scholar
12 weeks ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Great Question
5 months ago,
created a question with more than 5,000 views.
For Disable Soft-Clipping Bwa Aln
Scholar
5 months ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Scholar
12 months ago,
created an answer that has been accepted.
For A: Why Cannot Limma Package Do Differential Expression Between Two Samples Without
Scholar
12 months ago,
created an answer that has been accepted.
For A: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
Scholar
12 months ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Popular Question
12 months ago,
created a question with more than 1,000 views.
For Cancer genomics journals
Scholar
12 months ago,
created an answer that has been accepted.
For A: Method to detect gene co-expression of genomic feature in cell lineage
Scholar
12 months ago,
created an answer that has been accepted.
For A: any tool or R package for integrated analysis of miRNA and mRNA expression data
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Fastq Format Redundancy
Good Answer
2.5 years ago,
created an answer that was upvoted at least 5 times.
For A: Random Genomic Regions Of A Given Length Distribution
Good Answer
2.5 years ago,
created an answer that was upvoted at least 5 times.
For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Scholar
2.6 years ago,
created an answer that has been accepted.
For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Popular Question
2.7 years ago,
created a question with more than 1,000 views.
For Fastq Format Redundancy
Popular Question
2.7 years ago,
created a question with more than 1,000 views.
For Cancer genomics journals
Popular Question
2.9 years ago,
created a question with more than 1,000 views.
For Revolution (?) in CNA detection using exome/targeted sequencing
Popular Question
2.9 years ago,
created a question with more than 1,000 views.
For Fastq Format Redundancy
Good Answer
2.9 years ago,
created an answer that was upvoted at least 5 times.
For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Appreciated
2.9 years ago,
created a post with more than 5 votes.
For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Appreciated
2.9 years ago,
created a post with more than 5 votes.
For C: Conditional Coloring Of Heatmaps
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1567 users visited in the last hour