User: Irsan

gravatar for Irsan
Irsan7.2k
Reputation:
7,210
Status:
Trusted
Location:
Amsterdam
Scholar ID:
Google Scholar Page
Last seen:
1 week ago
Joined:
8 years, 1 month ago
Email:
i**********@gmail.com

PhD-student at Clinical Genetics, VU medical centre

Posts by Irsan

<prev • 499 results • page 1 of 50 • next >
1
vote
1
answer
122
views
1
answers
Comment: C: How to get transcripts lengths from RNAseq data to calculate TPM
... Please have a look at [this post][1] [1]: https://www.biostars.org/p/83901/ ...
written 16 days ago by Irsan7.2k
2
votes
0
answers
138
views
0
answers
Canu diploid assembly with nanopore reads
... I'd like to use the canu assembler to assembly my diploid organisms sequenced with MinION. Instead of smashing heterozygous sites to a single allele, I want canu to retain both alleles in the assembled sequenced. I am aware that I will therefore end up with a redundant assembly where each contig wil ...
assembly diploid canu written 4 weeks ago by Irsan7.2k • updated 21 days ago by Biostar ♦♦ 20
0
votes
1
answer
185
views
1
answers
Comment: C: How do you get input files to a cromwell server
... Hi Geraldine (I think??), How do I make the cromwell server machine recognize the client/submission machine's file system? For example, do you recommend to to make my data directory on the client shareable over the network (SMB/CIFS), or can I adapt the URI string in my input file to something that ...
written 5 months ago by Irsan7.2k
0
votes
1
answer
185
views
1
answer
How do you get input files to a cromwell server
... I make use of cromwell in server mode to execute bioinformatics data processing pipelines written in widdle (.wdl = workflow description language). The machine from which I submit workflows is not the same as the machine that hosts the cromwell server (so a remote cromwell server). The input files f ...
workflow cromwell widdle wdl written 5 months ago by Irsan7.2k • updated 5 months ago by vdauwera970
1
vote
2
answers
1.3k
views
2
answers
Comment: C: Workshop: Data manipulation and visualization with Python (3 places left)
... From now, 2 places left! Just signed up for the course. Looks promising! ...
written 3.8 years ago by Irsan7.2k
1
vote
10
answers
92k
views
10
answers
Comment: C: Fastq Convert To Fasta
... OK, I have changed fasta to fastq ...
written 4.0 years ago by Irsan7.2k
0
votes
2
answers
1.4k
views
2
answers
Answer: A: Heatmap trouble in R
... Because it scales the data. Use the scale="none" option ...
written 4.0 years ago by Irsan7.2k
0
votes
6
answers
2.4k
views
6
answers
Comment: C: Is microarray gene expression analysis is dead ?
... Oh yeah that's right, forgot about that... ...
written 4.1 years ago by Irsan7.2k
1
vote
1
answer
2.0k
views
1
answers
Comment: C: How to draw lego plot Using Mutation Data (MAF format input)?
... I would advice against it. Becuase of the three dimensions, some bars can block others. ...
written 4.1 years ago by Irsan7.2k
0
votes
6
answers
2.4k
views
6
answers
Answer: A: Is microarray gene expression analysis is dead ?
... In research, micro-arrays are on their return but in clinical diagnostics they are still used a lot, in particular array-CGH or SNP-arrays to determine germ line CNVs that predispose to disease. ...
written 4.1 years ago by Irsan7.2k

Latest awards to Irsan

Scholar 5 months ago, created an answer that has been accepted. For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Titv Meaning
Great Question 7 months ago, created a question with more than 5,000 views. For Disable Soft-Clipping Bwa Aln
Scholar 7 months ago, created an answer that has been accepted. For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Scholar 15 months ago, created an answer that has been accepted. For A: Why Cannot Limma Package Do Differential Expression Between Two Samples Without
Scholar 15 months ago, created an answer that has been accepted. For A: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
Scholar 15 months ago, created an answer that has been accepted. For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Popular Question 15 months ago, created a question with more than 1,000 views. For Cancer genomics journals
Scholar 15 months ago, created an answer that has been accepted. For A: Method to detect gene co-expression of genomic feature in cell lineage
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Titv Meaning
Scholar 15 months ago, created an answer that has been accepted. For A: any tool or R package for integrated analysis of miRNA and mRNA expression data
Popular Question 18 months ago, created a question with more than 1,000 views. For Fastq Format Redundancy
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Titv Meaning
Good Answer 2.8 years ago, created an answer that was upvoted at least 5 times. For A: Random Genomic Regions Of A Given Length Distribution
Good Answer 2.8 years ago, created an answer that was upvoted at least 5 times. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Scholar 2.8 years ago, created an answer that has been accepted. For A: Bedtools Genomecoveragebed Usage : How To do per base coverage analysis for only
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Fastq Format Redundancy
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Cancer genomics journals
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Revolution (?) in CNA detection using exome/targeted sequencing
Appreciated 3.1 years ago, created a post with more than 5 votes. For C: Superimpose 2 Heatmaps
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Fastq Format Redundancy
Good Answer 3.1 years ago, created an answer that was upvoted at least 5 times. For A: If you have a chance to ask questions to the CEO of Illumina, what would you do?
Appreciated 3.1 years ago, created a post with more than 5 votes. For C: Conditional Coloring Of Heatmaps
Appreciated 3.3 years ago, created a post with more than 5 votes. For C: Superimpose 2 Heatmaps

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1033 users visited in the last hour