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Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm rna-seq bioconductor
updated 5 months ago by 43k • written 10.5 years ago by ★ 7.8k
0
votes
0
replies
317
views
Show mismatches for specific positions in AlignmentsTrack of Gviz package
R bioconductor
8 months ago by Irsan ★ 7.8k
0
votes
0
replies
1.1k
views
Comment: Comment: How to write gffutils.feature.Feature object to file
2.6 years ago by Irsan ★ 7.8k
4
votes
2
replies
1.1k
views
How to write gffutils.feature.Feature object to file
gffutils python gff
2.6 years ago by Irsan ★ 7.8k
1
vote
1
reply
753
views
How to get uniform data yields per barcode in nanopore sequencing
ONT nanopore
updated 2.7 years ago by ▴ 520 • written 2.8 years ago by ★ 7.8k
1
vote
0
replies
4.5k
views
Answer: A: Xenome Star Aligner
updated 3.5 years ago by 43k • written 10.0 years ago by ★ 7.8k
1
vote
1
reply
4.0k
views
Comment: C: How to get transcripts lengths from RNAseq data to calculate TPM
3.5 years ago by Irsan ★ 7.8k
2
votes
1
reply
1.4k
views
Canu diploid assembly with nanopore reads
assembly canu diploid
updated 3.5 years ago by 20 • written 3.6 years ago by ★ 7.8k
1
vote
1
reply
4.4k
views
Answer: A: How To Remove The Identifier And Quality From A Fastq File
updated 3.8 years ago by 43k • written 11.4 years ago by ★ 7.8k
0
votes
0
replies
1.7k
views
Comment: C: How do you get input files to a cromwell server
4.0 years ago by Irsan ★ 7.8k
0
votes
2
replies
1.7k
views
How do you get input files to a cromwell server
cromwell wdl widdle workflow
updated 4.0 years ago by ★ 1.2k • written 4.0 years ago by ★ 7.8k
3
votes
1
reply
8.2k
views
Answer: A: Get Genotypes From Affymetrix Snp 6.0 Array
updated 4.1 years ago by 87k • written 11.2 years ago by ★ 7.8k
12
votes
2
replies
26k
views
Answer: Answer: Calculate Per Exon/Per Gene Coverage
updated 2.3 years ago by 104k • written 11.3 years ago by ★ 7.8k
7
votes
1
reply
20k
views
Answer: A: Scatter Plot For Correlations With Heatdensity
updated 4.3 years ago by 43k • written 10.9 years ago by ★ 7.8k
0
votes
1
reply
2.7k
views
Answer: A: how to normalise/Scale the FPKM and Ka/Ks value in a matrix?
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 7.8k
0
votes
1
reply
4.6k
views
Comment: C: CBS segmentation with DNAcopy taking ages/hanging
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 7.8k
0
votes
0
replies
4.6k
views
Comment: C: CBS segmentation with DNAcopy taking ages/hanging
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 7.8k
2
votes
1
reply
5.1k
views
Answer: A: calculating the exome size from latest GTF file
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 7.8k
1
vote
2
replies
5.7k
views
Comment: C: plotting interactions in R with two data sets
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 7.8k
4
votes
1
reply
5.7k
views
Answer: A: plotting interactions in R with two data sets
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 7.8k
8
votes
2
replies
13k
views
Answer: A: CNV analysis tool on exome data for NGS
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 7.8k
0
votes
1
reply
5.3k
views
Comment: C: Percentage Of Exons Covered
updated 4.4 years ago by 43k • written 10.8 years ago by ★ 7.8k
1
vote
1
reply
3.2k
views
Answer: A: Possible methodology implemented in R/Bioconductor packages to integrate and ana
updated 4.4 years ago by 43k • written 8.6 years ago by ★ 7.8k
24
votes
4
replies
128k
views
Answer: A: Fastq Convert To Fasta
updated 4.5 years ago by 43k • written 10.5 years ago by ★ 7.8k
1
vote
0
replies
1.8k
views
Answer: A: Method to detect gene co-expression of genomic feature in cell lineage
updated 4.5 years ago by 43k • written 8.9 years ago by ★ 7.8k
1
vote
1
reply
14k
views
Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 4.5 years ago by 43k • written 10.6 years ago by ★ 7.8k
3
votes
0
replies
3.0k
views
Answer: A: How To Determine Structural Variant Type Or Reformat Breakpoint Data To Bam
updated 4.6 years ago by 43k • written 11.1 years ago by ★ 7.8k
0
votes
6
replies
3.4k
views
Cnv Analysis After Segmentations
cnv
updated 18 months ago by 43k • written 11.6 years ago by ★ 7.8k
24
votes
3
replies
3.2k
views
Blog: General recommendations for cancer genomics studies
cancer genomics recommendations
updated 14 months ago by 43k • written 7.9 years ago by ★ 7.8k
1
vote
0
replies
2.1k
views
Comment: C: Workshop: Data manipulation and visualization with Python (3 places left)
7.2 years ago by Irsan ★ 7.8k
6
votes
4
replies
6.2k
views
Download Geo Samples Table
geo
updated 7.4 years ago by 20 • written 11.0 years ago by ★ 7.8k
1
vote
0
replies
128k
views
Comment: C: Fastq Convert To Fasta
7.5 years ago by Irsan ★ 7.8k
0
votes
0
replies
2.1k
views
Answer: A: Heatmap trouble in R
7.5 years ago by Irsan ★ 7.8k
0
votes
0
replies
4.6k
views
Comment: C: Is microarray gene expression analysis is dead ?
7.6 years ago by Irsan ★ 7.8k
1
vote
0
replies
2.9k
views
Comment: C: How to draw lego plot Using Mutation Data (MAF format input)?
7.6 years ago by Irsan ★ 7.8k
0
votes
1
reply
4.6k
views
Answer: A: Is microarray gene expression analysis is dead ?
7.6 years ago by Irsan ★ 7.8k
2
votes
4
replies
4.7k
views
Why does GISTIC require a markers file?
GISTIC Copy number
updated 7.8 years ago by ▴ 10 • written 7.9 years ago by ★ 7.8k
2
votes
0
replies
8.8k
views
Comment: C: Calculate LogR ratio and BAF from X and Y intensities
7.8 years ago by Irsan ★ 7.8k
1
vote
1
reply
8.8k
views
Answer: A: Calculate LogR ratio and BAF from X and Y intensities
7.8 years ago by Irsan ★ 7.8k
0
votes
0
replies
14k
views
Comment: C: How to get counts of STAR output (sam/bam).
7.9 years ago by Irsan ★ 7.8k
1
vote
1
reply
14k
views
Answer: A: How to get counts of STAR output (sam/bam).
7.9 years ago by Irsan ★ 7.8k
11
votes
3
replies
12k
views
Answer: A: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
7.9 years ago by Irsan ★ 7.8k
0
votes
1
reply
4.4k
views
Comment: C: csv into genome browser
7.9 years ago by Irsan ★ 7.8k
1
vote
1
reply
4.4k
views
Comment: C: csv into genome browser
7.9 years ago by Irsan ★ 7.8k
0
votes
1
reply
2.1k
views
Answer: A: CNV detection analysis using R or Matlab
7.9 years ago by Irsan ★ 7.8k
0
votes
0
replies
1.8k
views
Comment: C: Co-variants in differential expression analysis
8.0 years ago by Irsan ★ 7.8k
1
vote
0
replies
4.1k
views
Comment: C: mutation signature in cancer
8.0 years ago by Irsan ★ 7.8k
0
votes
0
replies
1.6k
views
Comment: C: Can I identify differential expressing genes of 2 samples using only 4 chips?
8.0 years ago by Irsan ★ 7.8k
0
votes
1
reply
4.5k
views
Comment: C: Downregulated Genes with GFOLD
8.0 years ago by Irsan ★ 7.8k
1
vote
1
reply
4.1k
views
Comment: C: mutation signature in cancer
8.0 years ago by Irsan ★ 7.8k
494 results • Page 1 of 10
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