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Comment: Comment: HTSlib threads when ingesting large bgzipped FASTA
6 months ago by aw7 ▴ 390
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957
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Answer: Answer: Does sam 2048 flag discriminate secondary from supplementary alignments?
6 months ago by aw7 ▴ 390
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718
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Answer: Answer: samtools reheader error
9 months ago by aw7 ▴ 390
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1.0k
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Answer: Answer: samtools version 1.17 having difficulty parsing a filtering command. advice?
9 months ago by aw7 ▴ 390
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685
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Comment: Comment: Guidance on Reference-Based Assembly and Variant Analysis of Exome Sequencing Da
13 months ago by aw7 ▴ 390
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2.1k
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Answer: Answer: samtools write-index
16 months ago by aw7 ▴ 390
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1.7k
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Comment: Comment: Using samtools with GCS (google cloud storage) on a docker container seems to gi
16 months ago by aw7 ▴ 390
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773
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Answer: Answer: Long reads and fixing of mate-pair issues/marking duplicates with samtools
16 months ago by aw7 ▴ 390
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1.3k
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Answer: Answer: Help interpreting Samtools Flagstat results
20 months ago by aw7 ▴ 390
3
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1.5k
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Answer: Answer: samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in
20 months ago by aw7 ▴ 390
2
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828
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Answer: Answer: Issue softclipping reads when they belong and don't belong to a common amplicon
21 months ago by aw7 ▴ 390
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1.2k
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Comment: Comment: Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coor
22 months ago by aw7 ▴ 390
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0
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1.5k
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Answer: Answer: Filtering for primary and secondary reads using sam flags (0 properly paired rea
23 months ago by aw7 ▴ 390
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0
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1.8k
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Comment: Comment: How is the format of the bed file for samtools ampliconclip
2.0 years ago by aw7 ▴ 390
4
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1
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1.3k
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Answer: Answer: samtools ampliconclip option --strand is not working?
2.0 years ago by aw7 ▴ 390
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734
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Comment: Comment: How to get MD tag sequence of a read from a sam file given a bed file?
2.1 years ago by aw7 ▴ 390
4
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1
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3.8k
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Answer: Answer: What are bitsets in Samtools flagstat output?
2.1 years ago by aw7 ▴ 390
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1
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2.3k
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Comment: Comment: Edit and re-head BAM file
2.4 years ago by aw7 ▴ 390
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1.8k
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Comment: Comment: Sort BAM file by read mates
2.9 years ago by aw7 ▴ 390
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1
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1.8k
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Comment: Comment: Samtools flagstat
3.0 years ago by aw7 ▴ 390
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1.7k
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Comment: Comment: Samtools ampliconclip hard clip not giving same results as soft clip
3.0 years ago by aw7 ▴ 390
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0
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3.3k
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Comment: Comment: How to properly pass from samtools rmdup to samtools markdup
3.1 years ago by aw7 ▴ 390
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1.5k
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Comment: Comment: BAM reheader
3.4 years ago by aw7 ▴ 390
2
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2.2k
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Answer: Answer: What is the MAPQ value of flag 512 for bam file?
3.5 years ago by aw7 ▴ 390
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1.8k
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Comment: Comment: samtools markdup
3.6 years ago by aw7 ▴ 390
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1
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1.8k
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Comment: Comment: samtools markdup
3.6 years ago by aw7 ▴ 390
2
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5.7k
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Comment: Comment: samtools sort not working when using multiple threads
3.6 years ago by aw7 ▴ 390
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2.5k
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Comment: Comment: Samtools on arm / aws
3.6 years ago by aw7 ▴ 390
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1
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2.5k
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Answer: Answer: Samtools on arm / aws
3.6 years ago by aw7 ▴ 390
1
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1
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5.7k
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Comment: Comment: samtools sort not working when using multiple threads
3.6 years ago by aw7 ▴ 390
1
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0
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2.3k
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Answer: Answer: Header error while converting sam file to bam
3.8 years ago by aw7 ▴ 390
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2.0k
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Answer: Answer: Picard vs Samtools converting CRAM to FASTQ
3.9 years ago by aw7 ▴ 390
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1.9k
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Comment: Comment: bamdst gives error "EOF marker is absent. The input is probably truncated."
4.0 years ago by aw7 ▴ 390
3
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1.5k
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Answer: Answer: What does samtools mean by 'orientation' when marking duplicates?
4.0 years ago by aw7 ▴ 390
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1.5k
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Answer: Answer: What does the -0 flag of samtools fastq mean?
4.5 years ago by aw7 ▴ 390
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0
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1.7k
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Answer: A: Doing nohup samtools sort and [ 1]+ Exit 1 is showing up
4.8 years ago by aw7 ▴ 390
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