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Answer:
Answer: Help interpreting Samtools Flagstat results
12 weeks ago by
aw7
▴ 270
3
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0
replies
739
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Answer:
Answer: samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in
3 months ago by
aw7
▴ 270
2
votes
0
replies
421
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Answer:
Answer: Issue softclipping reads when they belong and don't belong to a common amplicon
4 months ago by
aw7
▴ 270
0
votes
0
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617
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Comment:
Comment: Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coor
5 months ago by
aw7
▴ 270
0
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0
replies
480
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Answer:
Answer: Filtering for primary and secondary reads using sam flags (0 properly paired rea
5 months ago by
aw7
▴ 270
1
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0
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929
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Comment:
Comment: How is the format of the bed file for samtools ampliconclip
7 months ago by
aw7
▴ 270
4
votes
1
reply
646
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Answer:
Answer: samtools ampliconclip option --strand is not working?
7 months ago by
aw7
▴ 270
0
votes
0
replies
370
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Comment:
Comment: How to get MD tag sequence of a read from a sam file given a bed file?
8 months ago by
aw7
▴ 270
3
votes
1
reply
1.1k
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Answer:
Answer: What are bitsets in Samtools flagstat output?
8 months ago by
aw7
▴ 270
1
vote
1
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1.1k
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Comment:
Comment: Edit and re-head BAM file
11 months ago by
aw7
▴ 270
1
vote
0
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1.0k
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Comment:
Comment: Sort BAM file by read mates
17 months ago by
aw7
▴ 270
0
votes
1
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1.1k
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Comment:
Comment: Samtools flagstat
19 months ago by
aw7
▴ 270
0
votes
0
replies
997
views
Comment:
Comment: Samtools ampliconclip hard clip not giving same results as soft clip
19 months ago by
aw7
▴ 270
1
vote
0
replies
1.7k
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Comment:
Comment: How to properly pass from samtools rmdup to samtools markdup
20 months ago by
aw7
▴ 270
0
votes
0
replies
884
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Comment:
Comment: BAM reheader
23 months ago by
aw7
▴ 270
2
votes
0
replies
1.3k
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Answer:
Answer: What is the MAPQ value of flag 512 for bam file?
2.1 years ago by
aw7
▴ 270
0
votes
0
replies
1.1k
views
Comment:
Comment: samtools markdup
2.2 years ago by
aw7
▴ 270
0
votes
1
reply
1.1k
views
Comment:
Comment: samtools markdup
2.2 years ago by
aw7
▴ 270
2
votes
0
replies
3.1k
views
Comment:
Comment: samtools sort not working when using multiple threads
2.2 years ago by
aw7
▴ 270
0
votes
0
replies
1.6k
views
Comment:
Comment: Samtools on arm / aws
2.2 years ago by
aw7
▴ 270
0
votes
1
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1.6k
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Answer:
Answer: Samtools on arm / aws
2.2 years ago by
aw7
▴ 270
1
vote
1
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3.1k
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Comment:
Comment: samtools sort not working when using multiple threads
2.2 years ago by
aw7
▴ 270
1
vote
0
replies
1.5k
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Answer:
Answer: Header error while converting sam file to bam
2.4 years ago by
aw7
▴ 270
1
vote
0
replies
1.3k
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Answer:
Answer: Picard vs Samtools converting CRAM to FASTQ
2.4 years ago by
aw7
▴ 270
0
votes
0
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1.4k
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Comment:
Comment: bamdst gives error "EOF marker is absent. The input is probably truncated."
2.6 years ago by
aw7
▴ 270
3
votes
0
replies
1.1k
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Answer:
Answer: What does samtools mean by 'orientation' when marking duplicates?
2.6 years ago by
aw7
▴ 270
0
votes
0
replies
1.0k
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Answer:
Answer: What does the -0 flag of samtools fastq mean?
3.1 years ago by
aw7
▴ 270
1
vote
0
replies
1.2k
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Answer:
A: Doing nohup samtools sort and [ 1]+ Exit 1 is showing up
3.4 years ago by
aw7
▴ 270
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