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Answer: Answer: Help interpreting Samtools Flagstat results
3 months ago by aw7 ▴ 270
3
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0
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746
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Answer: Answer: samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in
3 months ago by aw7 ▴ 270
2
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0
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424
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Answer: Answer: Issue softclipping reads when they belong and don't belong to a common amplicon
4 months ago by aw7 ▴ 270
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0
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621
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Comment: Comment: Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coor
5 months ago by aw7 ▴ 270
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0
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485
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Answer: Answer: Filtering for primary and secondary reads using sam flags (0 properly paired rea
6 months ago by aw7 ▴ 270
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0
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939
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Comment: Comment: How is the format of the bed file for samtools ampliconclip
7 months ago by aw7 ▴ 270
4
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1
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650
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Answer: Answer: samtools ampliconclip option --strand is not working?
7 months ago by aw7 ▴ 270
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0
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371
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Comment: Comment: How to get MD tag sequence of a read from a sam file given a bed file?
8 months ago by aw7 ▴ 270
3
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1
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1.1k
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Answer: Answer: What are bitsets in Samtools flagstat output?
8 months ago by aw7 ▴ 270
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1
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1.1k
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Comment: Comment: Edit and re-head BAM file
11 months ago by aw7 ▴ 270
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0
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1.1k
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Comment: Comment: Sort BAM file by read mates
17 months ago by aw7 ▴ 270
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1
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1.1k
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Comment: Comment: Samtools flagstat
19 months ago by aw7 ▴ 270
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1.0k
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Comment: Comment: Samtools ampliconclip hard clip not giving same results as soft clip
19 months ago by aw7 ▴ 270
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0
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1.7k
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Comment: Comment: How to properly pass from samtools rmdup to samtools markdup
20 months ago by aw7 ▴ 270
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0
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894
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Comment: Comment: BAM reheader
23 months ago by aw7 ▴ 270
2
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0
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1.3k
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Answer: Answer: What is the MAPQ value of flag 512 for bam file?
2.1 years ago by aw7 ▴ 270
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1.1k
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Comment: Comment: samtools markdup
2.2 years ago by aw7 ▴ 270
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1
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1.1k
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Comment: Comment: samtools markdup
2.2 years ago by aw7 ▴ 270
2
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3.2k
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Comment: Comment: samtools sort not working when using multiple threads
2.2 years ago by aw7 ▴ 270
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0
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1.6k
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Comment: Comment: Samtools on arm / aws
2.2 years ago by aw7 ▴ 270
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1
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1.6k
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Answer: Answer: Samtools on arm / aws
2.2 years ago by aw7 ▴ 270
1
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1
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3.2k
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Comment: Comment: samtools sort not working when using multiple threads
2.2 years ago by aw7 ▴ 270
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0
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1.5k
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Answer: Answer: Header error while converting sam file to bam
2.4 years ago by aw7 ▴ 270
1
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0
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1.3k
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Answer: Answer: Picard vs Samtools converting CRAM to FASTQ
2.4 years ago by aw7 ▴ 270
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0
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1.4k
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Comment: Comment: bamdst gives error "EOF marker is absent. The input is probably truncated."
2.6 years ago by aw7 ▴ 270
3
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0
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1.1k
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Answer: Answer: What does samtools mean by 'orientation' when marking duplicates?
2.6 years ago by aw7 ▴ 270
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0
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1.0k
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Answer: Answer: What does the -0 flag of samtools fastq mean?
3.1 years ago by aw7 ▴ 270
1
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0
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1.2k
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Answer: A: Doing nohup samtools sort and [ 1]+ Exit 1 is showing up
3.4 years ago by aw7 ▴ 270
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