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Answer: Answer: Error: ##fileformat=VCFv4.2 does not exist
21 months ago by sbstevenlee ▴ 480
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Answer: Answer: Generating Depth of Coverage files from vcf.
2.2 years ago by sbstevenlee ▴ 480
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Answer: Answer: Calling star alleles with PGx-POP on my VCF file
2.3 years ago by sbstevenlee ▴ 480
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1.6k
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Answer: Answer: Missing data per site
2.5 years ago by sbstevenlee ▴ 480
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Answer: Answer: Weird behavior of `--max-depth` argument from `bcftools mpileup` command when it
2.6 years ago by sbstevenlee ▴ 480
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1.4k
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Answer: Answer: Vcf : remove variant absent in affected sample
2.6 years ago by sbstevenlee ▴ 480
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4.4k
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Answer: Answer: BCFtools allele frequency for specific population
2.6 years ago by sbstevenlee ▴ 480
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2.6k
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Answer: Answer: Need help to read samples from PyVCF
2.7 years ago by sbstevenlee ▴ 480
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759
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Answer: Answer: vcf file per-sample comparison in a region
2.7 years ago by sbstevenlee ▴ 480
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1.6k
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Answer: Answer: Strange error when using gzip.open with a VCF file
2.7 years ago by sbstevenlee ▴ 480
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6.8k
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Answer: Answer: convert csv file to bed file
2.7 years ago by sbstevenlee ▴ 480
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869
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Answer: Answer: Understanding haplotype notations (output from EAGLE2)
2.8 years ago by sbstevenlee ▴ 480
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1.8k
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Answer: Answer: VCF using Python
2.8 years ago by sbstevenlee ▴ 480
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Answer: Answer: Finding variants common to subset of samples in multi-sample VCF
2.8 years ago by sbstevenlee ▴ 480
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2.2k
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Answer: Answer: 012 matrix variation for multiple alleles
2.9 years ago by sbstevenlee ▴ 480
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1.5k
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Answer: Answer: Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBM
2.9 years ago by sbstevenlee ▴ 480
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1.3k
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Answer: Answer: vcftools 012 apparently is giving me wrong genotypes
3.0 years ago by sbstevenlee ▴ 480
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3.3k
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Answer: Answer: struggling in using bcftools to set variants to missing
3.0 years ago by sbstevenlee ▴ 480
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1.2k
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Answer: Answer: Shared variants
3.0 years ago by sbstevenlee ▴ 480
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774
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Answer: Answer: How to find differentially mutated genes between two groups of samples?
3.0 years ago by sbstevenlee ▴ 480
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2.0k
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Answer: Answer: Alelle frequency plot
3.0 years ago by sbstevenlee ▴ 480
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932
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Answer: Answer: fuc.pyvcf Attribute Error
3.0 years ago by sbstevenlee ▴ 480
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Answer: Answer: How to filter a VCF file with a list of CHR or contig IDs?
3.0 years ago by sbstevenlee ▴ 480
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6.3k
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Answer: Answer: How to write a Python script to edit a .vcf file?
3.1 years ago by sbstevenlee ▴ 480
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2
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3.7k
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Answer: Answer: Applying Machine Learning on vcf file
3.1 years ago by sbstevenlee ▴ 480
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1
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3.5k
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Answer: Answer: User friendly (visual&interactive) VCF/BCF mining tools (2021)
3.1 years ago by sbstevenlee ▴ 480
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2.6k
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Answer: Answer: Filter on Allele Balance using BCFTools
3.2 years ago by sbstevenlee ▴ 480
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1.3k
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Answer: Answer: Variant Calling Heterozygous Reference Alleles
3.2 years ago by sbstevenlee ▴ 480
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1.9k
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Answer: Answer: Allele frequency calculation
3.2 years ago by sbstevenlee ▴ 480
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4.0k
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Answer: Answer: plotting AF in vcf files
3.3 years ago by sbstevenlee ▴ 480
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1.9k
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Answer: Answer: How to subset vcf by sample and write?
3.3 years ago by sbstevenlee ▴ 480
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3.0k
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Answer: Answer: How to calculate genotype concordance, comparing two .vcf files with Picard or S
3.3 years ago by sbstevenlee ▴ 480
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8.9k
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Answer: Answer: TypeError: must be real number, not dict in python
3.3 years ago by sbstevenlee ▴ 480
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0
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903
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Answer: Answer: Filter vcf file based on the GTs of a single sample
3.3 years ago by sbstevenlee ▴ 480
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2.8k
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Answer: Answer: how to filter out all the homozygous genotypes in a multi sample VCF file?
3.3 years ago by sbstevenlee ▴ 480
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2.0k
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Answer: Answer: How to filter VCF by the variant allele depth of a specific sample
3.3 years ago by sbstevenlee ▴ 480
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0
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1.3k
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Answer: Answer: Convert missing genotype ./. to homozygous 0/0 in vcf
3.3 years ago by sbstevenlee ▴ 480
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0
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685
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Answer: Answer: Adding fakes genotypes columns to a vcf file
3.3 years ago by sbstevenlee ▴ 480
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1
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2.1k
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Answer: Answer: How to filter gnomADe_AF < 0.001 with unix?
3.3 years ago by sbstevenlee ▴ 480
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0
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3.2k
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Answer: Answer: Mutational landscape plot from VCF files
3.3 years ago by sbstevenlee ▴ 480
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2
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1.7k
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Answer: Answer: Generating Positional List from VCF
3.4 years ago by sbstevenlee ▴ 480
3
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1
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3.2k
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Answer: Answer: Mutational landscape plot from VCF files
3.4 years ago by sbstevenlee ▴ 480
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2.9k
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Answer: Answer: Amount of unique variants in VCF with linux terminal
3.4 years ago by sbstevenlee ▴ 480
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2.1k
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Answer: Answer: Filter GQ , DP and Allele Balance in VCF
3.4 years ago by sbstevenlee ▴ 480
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2.4k
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Answer: Answer: bcftools merge
3.4 years ago by sbstevenlee ▴ 480
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2.7k
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Answer: Answer: bcftools plugin fill-tags with functions
3.4 years ago by sbstevenlee ▴ 480
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1
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1.4k
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Answer: Answer: Duplicate results in vardict vcf
3.4 years ago by sbstevenlee ▴ 480
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4.0k
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Answer: Answer: bcftools filter by protein prediction
3.4 years ago by sbstevenlee ▴ 480
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4.9k
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Answer: Answer: How to remove samples with no genotypes from vcf
3.4 years ago by sbstevenlee ▴ 480
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0
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4.9k
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Answer: Answer: How to remove samples with no genotypes from vcf
3.4 years ago by sbstevenlee ▴ 480
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