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Answer: Answer: Error: ##fileformat=VCFv4.2 does not exist
4 months ago by sbstevenlee ▴ 480
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1.2k
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Comment: Comment: 012 matrix variation for multiple alleles
5 months ago by sbstevenlee ▴ 480
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1.2k
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Comment: Comment: 012 matrix variation for multiple alleles
5 months ago by sbstevenlee ▴ 480
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1.2k
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Comment: Comment: 012 matrix variation for multiple alleles
5 months ago by sbstevenlee ▴ 480
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1.2k
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Comment: Comment: 012 matrix variation for multiple alleles
5 months ago by sbstevenlee ▴ 480
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1.4k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
9 months ago by sbstevenlee ▴ 480
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813
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Answer: Answer: Generating Depth of Coverage files from vcf.
9 months ago by sbstevenlee ▴ 480
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2
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1.7k
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Comment: Comment: Why isn't GWAS used in oncology?
10 months ago by sbstevenlee ▴ 480
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1.4k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
10 months ago by sbstevenlee ▴ 480
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1
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1.4k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
10 months ago by sbstevenlee ▴ 480
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1
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1.4k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
10 months ago by sbstevenlee ▴ 480
1
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1
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1.4k
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Answer: Answer: Calling star alleles with PGx-POP on my VCF file
10 months ago by sbstevenlee ▴ 480
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806
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
12 months ago by sbstevenlee ▴ 480
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1
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806
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
12 months ago by sbstevenlee ▴ 480
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0
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806
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
12 months ago by sbstevenlee ▴ 480
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6
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806
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If I need to repeatedly perform variant calling from BAM for single gene only, do I really need entire reference FASTA?
variant-calling bam vcf bcftools fasta
12 months ago by sbstevenlee ▴ 480
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0
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912
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Answer: Answer: Missing data per site
13 months ago by sbstevenlee ▴ 480
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1
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524
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Comment: Comment: Hierarchical clustering in r
13 months ago by sbstevenlee ▴ 480
2
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2
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834
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Weird behavior of `--max-depth` argument from `bcftools mpileup` command when its value is too low
--max-depth bcftools mpileup
updated 14 months ago by 2.9k • written 14 months ago by ▴ 480
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834
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Answer: Answer: Weird behavior of `--max-depth` argument from `bcftools mpileup` command when it
14 months ago by sbstevenlee ▴ 480
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0
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762
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Answer: Answer: Vcf : remove variant absent in affected sample
14 months ago by sbstevenlee ▴ 480
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1
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1.9k
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Answer: Answer: BCFtools allele frequency for specific population
14 months ago by sbstevenlee ▴ 480
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3.7k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
14 months ago by sbstevenlee ▴ 480
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1.5k
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Comment: Comment: Need help to read samples from PyVCF
15 months ago by sbstevenlee ▴ 480
2
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1
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1.5k
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Answer: Answer: Need help to read samples from PyVCF
15 months ago by sbstevenlee ▴ 480
0
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0
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429
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Answer: Answer: vcf file per-sample comparison in a region
15 months ago by sbstevenlee ▴ 480
2
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1
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934
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Answer: Answer: Strange error when using gzip.open with a VCF file
16 months ago by sbstevenlee ▴ 480
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1
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3.3k
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Comment: Comment: convert csv file to bed file
16 months ago by sbstevenlee ▴ 480
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1
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3.3k
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Comment: Comment: convert csv file to bed file
16 months ago by sbstevenlee ▴ 480
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1
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3.3k
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Answer: Answer: convert csv file to bed file
16 months ago by sbstevenlee ▴ 480
2
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1
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485
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Answer: Answer: Understanding haplotype notations (output from EAGLE2)
16 months ago by sbstevenlee ▴ 480
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0
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1.3k
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Comment: Comment: Germline variant calling from BAM without reference
16 months ago by sbstevenlee ▴ 480
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1.3k
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Comment: Comment: Germline variant calling from BAM without reference
16 months ago by sbstevenlee ▴ 480
1
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4
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1.3k
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Germline variant calling from BAM without reference
vcf calling bam variant
16 months ago by sbstevenlee ▴ 480
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1
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1.1k
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Answer: Answer: VCF using Python
17 months ago by sbstevenlee ▴ 480
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1.0k
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Answer: Answer: Finding variants common to subset of samples in multi-sample VCF
17 months ago by sbstevenlee ▴ 480
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0
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2.0k
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Comment: Comment: Aspera Connect problem with "ascp: Taget address not available"
17 months ago by sbstevenlee ▴ 480
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2
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2.0k
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Aspera Connect problem with "ascp: Taget address not available"
ascp Aspera
17 months ago by sbstevenlee ▴ 480
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0
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4.0k
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Comment: Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
17 months ago by sbstevenlee ▴ 480
0
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1
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4.0k
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Comment: Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
17 months ago by sbstevenlee ▴ 480
2
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1
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1.2k
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Answer: Answer: 012 matrix variation for multiple alleles
17 months ago by sbstevenlee ▴ 480
1
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2
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1.1k
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Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBMCs"
scanpy
updated 17 months ago by 12k • written 17 months ago by ▴ 480
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1.1k
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Answer: Answer: Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBM
17 months ago by sbstevenlee ▴ 480
1
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0
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827
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Answer: Answer: vcftools 012 apparently is giving me wrong genotypes
18 months ago by sbstevenlee ▴ 480
2
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0
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1.7k
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Answer: Answer: struggling in using bcftools to set variants to missing
18 months ago by sbstevenlee ▴ 480
0
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0
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785
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Answer: Answer: Shared variants
18 months ago by sbstevenlee ▴ 480
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0
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523
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Answer: Answer: How to find differentially mutated genes between two groups of samples?
18 months ago by sbstevenlee ▴ 480
2
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1
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1.2k
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Answer: Answer: Alelle frequency plot
18 months ago by sbstevenlee ▴ 480
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0
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546
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Answer: Answer: fuc.pyvcf Attribute Error
18 months ago by sbstevenlee ▴ 480
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0
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7.0k
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Answer: Answer: How to filter a VCF file with a list of CHR or contig IDs?
19 months ago by sbstevenlee ▴ 480
99 results • Page 1 of 2
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