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Answer:
Answer: Error: ##fileformat=VCFv4.2 does not exist
19 months ago by
sbstevenlee
▴ 480
0
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0
replies
2.1k
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Comment:
Comment: 012 matrix variation for multiple alleles
20 months ago by
sbstevenlee
▴ 480
0
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1
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2.1k
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Comment:
Comment: 012 matrix variation for multiple alleles
20 months ago by
sbstevenlee
▴ 480
0
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0
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2.1k
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Comment:
Comment: 012 matrix variation for multiple alleles
20 months ago by
sbstevenlee
▴ 480
0
votes
2
replies
2.1k
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Comment:
Comment: 012 matrix variation for multiple alleles
20 months ago by
sbstevenlee
▴ 480
1
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0
replies
2.7k
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Comment:
Comment: Calling star alleles with PGx-POP on my VCF file
24 months ago by
sbstevenlee
▴ 480
0
votes
0
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1.6k
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Answer:
Answer: Generating Depth of Coverage files from vcf.
2.0 years ago by
sbstevenlee
▴ 480
0
votes
2
replies
2.7k
views
Comment:
Comment: Why isn't GWAS used in oncology?
2.1 years ago by
sbstevenlee
▴ 480
1
vote
1
reply
2.7k
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Comment:
Comment: Calling star alleles with PGx-POP on my VCF file
2.1 years ago by
sbstevenlee
▴ 480
1
vote
1
reply
2.7k
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Comment:
Comment: Calling star alleles with PGx-POP on my VCF file
2.1 years ago by
sbstevenlee
▴ 480
0
votes
1
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2.7k
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Comment:
Comment: Calling star alleles with PGx-POP on my VCF file
2.1 years ago by
sbstevenlee
▴ 480
1
vote
1
reply
2.7k
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Answer:
Answer: Calling star alleles with PGx-POP on my VCF file
2.1 years ago by
sbstevenlee
▴ 480
0
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0
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1.4k
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Comment:
Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
2.3 years ago by
sbstevenlee
▴ 480
0
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1
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1.4k
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Comment:
Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
2.3 years ago by
sbstevenlee
▴ 480
0
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1.4k
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Comment:
Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
2.3 years ago by
sbstevenlee
▴ 480
3
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6
replies
1.4k
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If I need to repeatedly perform variant calling from BAM for single gene only, do I really need entire reference FASTA?
variant-calling
bam
vcf
bcftools
fasta
2.3 years ago by
sbstevenlee
▴ 480
2
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0
replies
1.6k
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Answer:
Answer: Missing data per site
2.3 years ago by
sbstevenlee
▴ 480
0
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1
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849
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Comment:
Comment: Hierarchical clustering in r
2.4 years ago by
sbstevenlee
▴ 480
2
votes
2
replies
1.6k
views
Weird behavior of `--max-depth` argument from `bcftools mpileup` command when its value is too low
bcftools
mpileup
updated 14 months ago by
Ram
44k • written 2.4 years ago by
sbstevenlee
▴ 480
1
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0
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1.6k
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Answer:
Answer: Weird behavior of `--max-depth` argument from `bcftools mpileup` command when it
2.4 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
1.3k
views
Answer:
Answer: Vcf : remove variant absent in affected sample
2.5 years ago by
sbstevenlee
▴ 480
0
votes
1
reply
4.0k
views
Answer:
Answer: BCFtools allele frequency for specific population
2.5 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
5.1k
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Comment:
Comment: Methodological problems are extremely common for enrichment analysis - beware th
2.5 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
2.4k
views
Comment:
Comment: Need help to read samples from PyVCF
2.5 years ago by
sbstevenlee
▴ 480
2
votes
1
reply
2.4k
views
Answer:
Answer: Need help to read samples from PyVCF
2.5 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
729
views
Answer:
Answer: vcf file per-sample comparison in a region
2.5 years ago by
sbstevenlee
▴ 480
2
votes
1
reply
1.6k
views
Answer:
Answer: Strange error when using gzip.open with a VCF file
2.6 years ago by
sbstevenlee
▴ 480
0
votes
1
reply
6.4k
views
Comment:
Comment: convert csv file to bed file
2.6 years ago by
sbstevenlee
▴ 480
0
votes
1
reply
6.4k
views
Comment:
Comment: convert csv file to bed file
2.6 years ago by
sbstevenlee
▴ 480
1
vote
1
reply
6.4k
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Answer:
Answer: convert csv file to bed file
2.6 years ago by
sbstevenlee
▴ 480
2
votes
1
reply
838
views
Answer:
Answer: Understanding haplotype notations (output from EAGLE2)
2.6 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
2.4k
views
Comment:
Comment: Germline variant calling from BAM without reference
2.6 years ago by
sbstevenlee
▴ 480
0
votes
1
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2.4k
views
Comment:
Comment: Germline variant calling from BAM without reference
2.6 years ago by
sbstevenlee
▴ 480
1
vote
4
replies
2.4k
views
Germline variant calling from BAM without reference
vcf
calling
bam
variant
2.6 years ago by
sbstevenlee
▴ 480
1
vote
1
reply
1.7k
views
Answer:
Answer: VCF using Python
2.6 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
1.9k
views
Answer:
Answer: Finding variants common to subset of samples in multi-sample VCF
2.7 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
3.6k
views
Comment:
Comment: Aspera Connect problem with "ascp: Taget address not available"
2.7 years ago by
sbstevenlee
▴ 480
1
vote
2
replies
3.6k
views
Aspera Connect problem with "ascp: Taget address not available"
ascp
Aspera
2.7 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
5.3k
views
Comment:
Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
2.7 years ago by
sbstevenlee
▴ 480
0
votes
1
reply
5.3k
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Comment:
Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
2.7 years ago by
sbstevenlee
▴ 480
2
votes
1
reply
2.1k
views
Answer:
Answer: 012 matrix variation for multiple alleles
2.7 years ago by
sbstevenlee
▴ 480
1
vote
2
replies
1.5k
views
Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBMCs"
scanpy
updated 2.7 years ago by
rpolicastro
13k • written 2.7 years ago by
sbstevenlee
▴ 480
1
vote
1
reply
1.5k
views
Answer:
Answer: Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBM
2.7 years ago by
sbstevenlee
▴ 480
1
vote
0
replies
1.3k
views
Answer:
Answer: vcftools 012 apparently is giving me wrong genotypes
2.8 years ago by
sbstevenlee
▴ 480
2
votes
0
replies
3.2k
views
Answer:
Answer: struggling in using bcftools to set variants to missing
2.8 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
1.2k
views
Answer:
Answer: Shared variants
2.8 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
753
views
Answer:
Answer: How to find differentially mutated genes between two groups of samples?
2.8 years ago by
sbstevenlee
▴ 480
2
votes
1
reply
1.9k
views
Answer:
Answer: Alelle frequency plot
2.8 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
890
views
Answer:
Answer: fuc.pyvcf Attribute Error
2.8 years ago by
sbstevenlee
▴ 480
0
votes
0
replies
11k
views
Answer:
Answer: How to filter a VCF file with a list of CHR or contig IDs?
2.8 years ago by
sbstevenlee
▴ 480
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