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Comment: Comment: Why isn't GWAS used in oncology?
6 days ago by sbstevenlee ▴ 470
1
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0
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563
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
12 days ago by sbstevenlee ▴ 470
1
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1
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563
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
13 days ago by sbstevenlee ▴ 470
0
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1
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563
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
22 days ago by sbstevenlee ▴ 470
1
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1
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563
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Answer: Answer: Calling star alleles with PGx-POP on my VCF file
22 days ago by sbstevenlee ▴ 470
0
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0
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520
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
11 weeks ago by sbstevenlee ▴ 470
0
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1
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520
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
11 weeks ago by sbstevenlee ▴ 470
0
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0
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520
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
11 weeks ago by sbstevenlee ▴ 470
3
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6
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520
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If I need to repeatedly perform variant calling from BAM for single gene only, do I really need entire reference FASTA?
variant-calling bam vcf bcftools fasta
11 weeks ago by sbstevenlee ▴ 470
2
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0
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623
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Answer: Answer: Missing data per site
3 months ago by sbstevenlee ▴ 470
0
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1
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355
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Comment: Comment: Hierarchical clustering in r
4 months ago by sbstevenlee ▴ 470
2
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2
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394
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Weird behavior of `--max-depth` argument from `bcftools mpileup` command when its value is too low
--max-depth bcftools mpileup
updated 4 months ago by 2.8k • written 4 months ago by ▴ 470
1
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0
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394
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Answer: Answer: Weird behavior of `--max-depth` argument from `bcftools mpileup` command when it
4 months ago by sbstevenlee ▴ 470
0
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0
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498
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Answer: Answer: Vcf : remove variant absent in affected sample
5 months ago by sbstevenlee ▴ 470
0
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1
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535
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Answer: Answer: BCFtools allele frequency for specific population
5 months ago by sbstevenlee ▴ 470
0
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0
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2.6k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
5 months ago by sbstevenlee ▴ 470
0
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0
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705
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Comment: Comment: Need help to read samples from PyVCF
6 months ago by sbstevenlee ▴ 470
2
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1
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705
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Answer: Answer: Need help to read samples from PyVCF
6 months ago by sbstevenlee ▴ 470
0
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0
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251
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Answer: Answer: vcf file per-sample comparison in a region
6 months ago by sbstevenlee ▴ 470
2
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1
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613
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Answer: Answer: Strange error when using gzip.open with a VCF file
6 months ago by sbstevenlee ▴ 470
0
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1
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1.1k
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Comment: Comment: convert csv file to bed file
6 months ago by sbstevenlee ▴ 470
0
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1
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1.1k
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Comment: Comment: convert csv file to bed file
6 months ago by sbstevenlee ▴ 470
1
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1
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1.1k
views
Answer: Answer: convert csv file to bed file
6 months ago by sbstevenlee ▴ 470
2
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1
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313
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Answer: Answer: Understanding haplotype notations (output from EAGLE2)
6 months ago by sbstevenlee ▴ 470
0
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0
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685
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Comment: Comment: Germline variant calling from BAM without reference
6 months ago by sbstevenlee ▴ 470
0
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1
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685
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Comment: Comment: Germline variant calling from BAM without reference
6 months ago by sbstevenlee ▴ 470
1
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4
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685
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Germline variant calling from BAM without reference
vcf calling bam variant
6 months ago by sbstevenlee ▴ 470
1
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1
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590
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Answer: Answer: VCF using Python
7 months ago by sbstevenlee ▴ 470
0
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0
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420
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Answer: Answer: Finding variants common to subset of samples in multi-sample VCF
7 months ago by sbstevenlee ▴ 470
0
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0
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830
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Comment: Comment: Aspera Connect problem with "ascp: Taget address not available"
7 months ago by sbstevenlee ▴ 470
1
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2
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830
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Aspera Connect problem with "ascp: Taget address not available"
ascp Aspera
7 months ago by sbstevenlee ▴ 470
0
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0
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3.1k
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Comment: Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
7 months ago by sbstevenlee ▴ 470
0
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1
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3.1k
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Comment: Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
7 months ago by sbstevenlee ▴ 470
2
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0
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335
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Answer: Answer: 012 matrix variation for multiple alleles
7 months ago by sbstevenlee ▴ 470
1
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2
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820
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Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBMCs"
scanpy
updated 7 months ago by 9.5k • written 7 months ago by ▴ 470
1
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1
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820
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Answer: Answer: Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBM
7 months ago by sbstevenlee ▴ 470
1
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0
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473
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Answer: Answer: vcftools 012 apparently is giving me wrong genotypes
8 months ago by sbstevenlee ▴ 470
2
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0
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793
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Answer: Answer: struggling in using bcftools to set variants to missing
8 months ago by sbstevenlee ▴ 470
0
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0
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508
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Answer: Answer: Shared variants
8 months ago by sbstevenlee ▴ 470
0
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0
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393
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Answer: Answer: How to find differentially mutated genes between two groups of samples?
9 months ago by sbstevenlee ▴ 470
2
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1
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868
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Answer: Answer: Alelle frequency plot
9 months ago by sbstevenlee ▴ 470
0
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0
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367
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Answer: Answer: fuc.pyvcf Attribute Error
9 months ago by sbstevenlee ▴ 470
0
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0
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3.8k
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Answer: Answer: How to filter a VCF file with a list of CHR or contig IDs?
9 months ago by sbstevenlee ▴ 470
1
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0
replies
2.0k
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Comment: Comment: How to write a Python script to edit a .vcf file?
9 months ago by sbstevenlee ▴ 470
3
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1
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2.0k
views
Answer: Answer: How to write a Python script to edit a .vcf file?
10 months ago by sbstevenlee ▴ 470
0
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1
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1.4k
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Comment: Comment: Applying Machine Learning on vcf file
10 months ago by sbstevenlee ▴ 470
0
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2
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1.4k
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Answer: Answer: Applying Machine Learning on vcf file
10 months ago by sbstevenlee ▴ 470
0
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2
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1.4k
views
Comment: Comment: compare two vcf files
11 months ago by sbstevenlee ▴ 470
0
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1
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1.4k
views
Comment: Comment: compare two vcf files
11 months ago by sbstevenlee ▴ 470
0
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1
reply
1.4k
views
Comment: Comment: compare two vcf files
11 months ago by sbstevenlee ▴ 470
92 results • Page 1 of 2
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