Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
0
replies
588
views
Answer:
Answer: Error: ##fileformat=VCFv4.2 does not exist
4 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
1.2k
views
Comment:
Comment: 012 matrix variation for multiple alleles
5 months ago by
sbstevenlee
▴ 480
0
votes
1
reply
1.2k
views
Comment:
Comment: 012 matrix variation for multiple alleles
5 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
1.2k
views
Comment:
Comment: 012 matrix variation for multiple alleles
5 months ago by
sbstevenlee
▴ 480
0
votes
2
replies
1.2k
views
Comment:
Comment: 012 matrix variation for multiple alleles
5 months ago by
sbstevenlee
▴ 480
1
vote
0
replies
1.4k
views
Comment:
Comment: Calling star alleles with PGx-POP on my VCF file
9 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
813
views
Answer:
Answer: Generating Depth of Coverage files from vcf.
9 months ago by
sbstevenlee
▴ 480
0
votes
2
replies
1.7k
views
Comment:
Comment: Why isn't GWAS used in oncology?
10 months ago by
sbstevenlee
▴ 480
1
vote
1
reply
1.4k
views
Comment:
Comment: Calling star alleles with PGx-POP on my VCF file
10 months ago by
sbstevenlee
▴ 480
1
vote
1
reply
1.4k
views
Comment:
Comment: Calling star alleles with PGx-POP on my VCF file
10 months ago by
sbstevenlee
▴ 480
0
votes
1
reply
1.4k
views
Comment:
Comment: Calling star alleles with PGx-POP on my VCF file
10 months ago by
sbstevenlee
▴ 480
1
vote
1
reply
1.4k
views
Answer:
Answer: Calling star alleles with PGx-POP on my VCF file
10 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
806
views
Comment:
Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
12 months ago by
sbstevenlee
▴ 480
0
votes
1
reply
806
views
Comment:
Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
12 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
806
views
Comment:
Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
12 months ago by
sbstevenlee
▴ 480
3
votes
6
replies
806
views
If I need to repeatedly perform variant calling from BAM for single gene only, do I really need entire reference FASTA?
variant-calling
bam
vcf
bcftools
fasta
12 months ago by
sbstevenlee
▴ 480
2
votes
0
replies
912
views
Answer:
Answer: Missing data per site
13 months ago by
sbstevenlee
▴ 480
0
votes
1
reply
524
views
Comment:
Comment: Hierarchical clustering in r
13 months ago by
sbstevenlee
▴ 480
2
votes
2
replies
834
views
Weird behavior of `--max-depth` argument from `bcftools mpileup` command when its value is too low
--max-depth
bcftools
mpileup
updated 14 months ago by
John Marshall
2.9k • written 14 months ago by
sbstevenlee
▴ 480
1
vote
0
replies
834
views
Answer:
Answer: Weird behavior of `--max-depth` argument from `bcftools mpileup` command when it
14 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
762
views
Answer:
Answer: Vcf : remove variant absent in affected sample
14 months ago by
sbstevenlee
▴ 480
0
votes
1
reply
1.9k
views
Answer:
Answer: BCFtools allele frequency for specific population
14 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
3.7k
views
Comment:
Comment: Methodological problems are extremely common for enrichment analysis - beware th
14 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
1.5k
views
Comment:
Comment: Need help to read samples from PyVCF
15 months ago by
sbstevenlee
▴ 480
2
votes
1
reply
1.5k
views
Answer:
Answer: Need help to read samples from PyVCF
15 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
429
views
Answer:
Answer: vcf file per-sample comparison in a region
15 months ago by
sbstevenlee
▴ 480
2
votes
1
reply
934
views
Answer:
Answer: Strange error when using gzip.open with a VCF file
16 months ago by
sbstevenlee
▴ 480
0
votes
1
reply
3.3k
views
Comment:
Comment: convert csv file to bed file
16 months ago by
sbstevenlee
▴ 480
0
votes
1
reply
3.3k
views
Comment:
Comment: convert csv file to bed file
16 months ago by
sbstevenlee
▴ 480
1
vote
1
reply
3.3k
views
Answer:
Answer: convert csv file to bed file
16 months ago by
sbstevenlee
▴ 480
2
votes
1
reply
485
views
Answer:
Answer: Understanding haplotype notations (output from EAGLE2)
16 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
1.3k
views
Comment:
Comment: Germline variant calling from BAM without reference
16 months ago by
sbstevenlee
▴ 480
0
votes
1
reply
1.3k
views
Comment:
Comment: Germline variant calling from BAM without reference
16 months ago by
sbstevenlee
▴ 480
1
vote
4
replies
1.3k
views
Germline variant calling from BAM without reference
vcf
calling
bam
variant
16 months ago by
sbstevenlee
▴ 480
1
vote
1
reply
1.1k
views
Answer:
Answer: VCF using Python
17 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
1.0k
views
Answer:
Answer: Finding variants common to subset of samples in multi-sample VCF
17 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
2.0k
views
Comment:
Comment: Aspera Connect problem with "ascp: Taget address not available"
17 months ago by
sbstevenlee
▴ 480
1
vote
2
replies
2.0k
views
Aspera Connect problem with "ascp: Taget address not available"
ascp
Aspera
17 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
4.0k
views
Comment:
Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
17 months ago by
sbstevenlee
▴ 480
0
votes
1
reply
4.0k
views
Comment:
Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
17 months ago by
sbstevenlee
▴ 480
2
votes
1
reply
1.2k
views
Answer:
Answer: 012 matrix variation for multiple alleles
17 months ago by
sbstevenlee
▴ 480
1
vote
2
replies
1.1k
views
Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBMCs"
scanpy
updated 17 months ago by
rpolicastro
12k • written 17 months ago by
sbstevenlee
▴ 480
1
vote
1
reply
1.1k
views
Answer:
Answer: Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBM
17 months ago by
sbstevenlee
▴ 480
1
vote
0
replies
827
views
Answer:
Answer: vcftools 012 apparently is giving me wrong genotypes
18 months ago by
sbstevenlee
▴ 480
2
votes
0
replies
1.7k
views
Answer:
Answer: struggling in using bcftools to set variants to missing
18 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
785
views
Answer:
Answer: Shared variants
18 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
523
views
Answer:
Answer: How to find differentially mutated genes between two groups of samples?
18 months ago by
sbstevenlee
▴ 480
2
votes
1
reply
1.2k
views
Answer:
Answer: Alelle frequency plot
18 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
546
views
Answer:
Answer: fuc.pyvcf Attribute Error
18 months ago by
sbstevenlee
▴ 480
0
votes
0
replies
7.0k
views
Answer:
Answer: How to filter a VCF file with a list of CHR or contig IDs?
19 months ago by
sbstevenlee
▴ 480
99 results • Page
1 of 2
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6