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0
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3.3k
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Comment: A: Help scaffolding an Illumina genome assembly with 10x reads
5.9 years ago by predeus ★ 2.1k
0
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0
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2.2k
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Answer: A: Trinity RSEM Bowtie2 align_and_estimate_abundance script error
6.1 years ago by predeus ★ 2.1k
2
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1
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4.3k
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Answer: A: Sequence duplication levels in de-novo assemblies
6.1 years ago by predeus ★ 2.1k
0
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2
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2.6k
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Answer: A: Principal Component Analysis PCA
6.1 years ago by predeus ★ 2.1k
0
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0
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2.6k
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Comment: C: Principal Component Analysis PCA
6.1 years ago by predeus ★ 2.1k
1
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0
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3.7k
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Answer: A: Best strategy to get GO terms for a proteome?
6.1 years ago by predeus ★ 2.1k
0
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0
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1.8k
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Comment: C: Eukaryotic gene annotation on gene predictions
6.1 years ago by predeus ★ 2.1k
7
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5
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1.8k
views
Eukaryotic gene annotation on gene predictions
annotation eukaryotic gene prediction
updated 6.2 years ago by 20 • written 6.2 years ago by ★ 2.1k
0
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0
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1.8k
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Comment: C: Eukaryotic gene annotation on gene predictions
6.2 years ago by predeus ★ 2.1k
0
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0
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3.9k
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Comment: C: RepeatModeler finishes without creating output files
6.3 years ago by predeus ★ 2.1k
0
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0
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4.4k
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Answer: A: RepeatMasker on new species
6.3 years ago by predeus ★ 2.1k
1
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0
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12k
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Comment: C: samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
6.3 years ago by predeus ★ 2.1k
4
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2
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12k
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Answer: A: samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
6.3 years ago by predeus ★ 2.1k
1
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0
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2.0k
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Answer: A: Is there some good software to align/compare fasta sequences in my PC
6.3 years ago by predeus ★ 2.1k
0
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0
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1.3k
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Answer: A: Looking for the best plot for overlapping features
6.3 years ago by predeus ★ 2.1k
4
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0
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8.1k
views
Answer: A: How to circularize genome assemblies
6.4 years ago by predeus ★ 2.1k
0
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0
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10k
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Comment: C: Batch effect correction
6.4 years ago by predeus ★ 2.1k
0
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0
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3.9k
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Comment: C: Is computing TPM from read count from DEseq2 count matrix necessary?
6.4 years ago by predeus ★ 2.1k
1
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0
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2.5k
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Answer: A: When will the HG 19/ GRC37 finally become obsolete
6.4 years ago by predeus ★ 2.1k
1
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0
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7.7k
views
Answer: A: which matrix should be used to draw heatmap in RNAseq?
6.4 years ago by predeus ★ 2.1k
0
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0
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1.8k
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Comment: C: Interpretation of several pairwise overlaps
6.4 years ago by predeus ★ 2.1k
0
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0
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1.4k
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Answer: A: Number of genes in a kegg pathway
6.4 years ago by predeus ★ 2.1k
0
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1
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4.3k
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Comment: A: .sra to bam conversion results in a "< myfile > does not have BAM or CRAM format
6.4 years ago by predeus ★ 2.1k
2
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0
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3.9k
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Answer: A: Is computing TPM from read count from DEseq2 count matrix necessary?
6.4 years ago by predeus ★ 2.1k
1
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0
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2.0k
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Comment: C: htseq-count cannot locate gff
6.4 years ago by predeus ★ 2.1k
1
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0
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4.5k
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Answer: A: Hybrid assembly using MinION data + correction with Illumina. Which strategy to
6.4 years ago by predeus ★ 2.1k
0
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1
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1.8k
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Answer: A: Interpretation of several pairwise overlaps
6.4 years ago by predeus ★ 2.1k
0
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1
reply
2.0k
views
Comment: C: htseq-count cannot locate gff
6.4 years ago by predeus ★ 2.1k
5
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1
reply
10k
views
Answer: A: Batch effect correction
6.4 years ago by predeus ★ 2.1k
2
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0
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2.7k
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Answer: A: plasmid recovery from hybrid assembly
6.4 years ago by predeus ★ 2.1k
1
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0
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16k
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Comment: C: Modern software for whole genome alignment visualization
6.4 years ago by predeus ★ 2.1k
25
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25
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16k
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11 follow
Modern software for whole genome alignment visualization
visualization whole-genome alignment mauve harvest
updated 6.4 years ago by • 0 • written 7.7 years ago by ★ 2.1k
0
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0
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1.2k
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Answer: A: Best way to search for presence of gene in whole genome of related species
6.4 years ago by predeus ★ 2.1k
0
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1
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2.7k
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Answer: A: How to find correspondence between GSM and all SRA identifiers (SRR DRR ERR) ?
6.4 years ago by predeus ★ 2.1k
1
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0
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2.8k
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Comment: C: Programs for bacterial gene prediction/annotation for nanopore assembly?
6.4 years ago by predeus ★ 2.1k
1
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1
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2.8k
views
Comment: C: Programs for bacterial gene prediction/annotation for nanopore assembly?
6.4 years ago by predeus ★ 2.1k
3
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1
reply
2.8k
views
Answer: A: Programs for bacterial gene prediction/annotation for nanopore assembly?
6.4 years ago by predeus ★ 2.1k
16
votes
7
replies
13k
views
Get a complete GSM-to-SRX/SRR table
GEO SRA GSM GSE SRAdb
updated 6.4 years ago by ▴ 70 • written 8.6 years ago by ★ 2.1k
0
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0
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5.2k
views
Comment: C: Combining HMMs and fasta for HMMER searches
6.5 years ago by predeus ★ 2.1k
12
votes
6
replies
11k
views
Racon-Illumina or Pilon?
Assembly nanopore polishing
updated 6.6 years ago by ▴ 40 • written 7.4 years ago by ★ 2.1k
0
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0
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7.9k
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Comment: C: STAR for bacterial genome
6.6 years ago by predeus ★ 2.1k
1
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0
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7.3k
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Answer: A: Is There A Tool To Visualize Sequence Graphs?
6.6 years ago by predeus ★ 2.1k
0
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0
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7.9k
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Comment: C: STAR for bacterial genome
6.7 years ago by predeus ★ 2.1k
0
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1
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7.9k
views
Comment: C: STAR for bacterial genome
6.7 years ago by predeus ★ 2.1k
8
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6
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3.1k
views
Using Bandage to finish ambiguous long-read assembly?
Assembly Bandage long reads Unicycler
updated 6.8 years ago by 20 • written 6.9 years ago by ★ 2.1k
1
vote
1
reply
20k
views
Comment: C: Best RNA-Seq aligner: A comparison of mapping tools
6.8 years ago by predeus ★ 2.1k
3
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2
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20k
views
Comment: C: Best RNA-Seq aligner: A comparison of mapping tools
6.8 years ago by predeus ★ 2.1k
1
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0
replies
3.1k
views
Comment: C: Using Bandage to finish ambiguous long-read assembly?
6.8 years ago by predeus ★ 2.1k
0
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0
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3.1k
views
Comment: C: Using Bandage to finish ambiguous long-read assembly?
6.8 years ago by predeus ★ 2.1k
1
vote
1
reply
3.1k
views
Comment: C: Using Bandage to finish ambiguous long-read assembly?
6.8 years ago by predeus ★ 2.1k
293 results • Page 4 of 6
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