Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
0
replies
1.4k
views
Comment:
Comment: Whole blood single cell RNA-seq dataset?
4 weeks ago by
predeus
★ 1.9k
0
votes
0
replies
2.7k
views
Answer:
Answer: HISAT2 relaxing parameters?
5 weeks ago by
predeus
★ 1.9k
3
votes
3
replies
360
views
Read counting in RSEM and Salmon (alignment mode)
quantification
RSEM
RNA-seq
Salmon
5 weeks ago by
predeus
★ 1.9k
2
votes
0
replies
360
views
Answer:
Answer: Read counting in RSEM and Salmon (alignment mode)
5 weeks ago by
predeus
★ 1.9k
1
vote
0
replies
360
views
Comment:
Comment: Read counting in RSEM and Salmon (alignment mode)
5 weeks ago by
predeus
★ 1.9k
0
votes
0
replies
152
views
Add HI:i:<n> tag to a BAM file
SAM
hisat2
STAR
tag
BAM
9 weeks ago by
predeus
★ 1.9k
2
votes
0
replies
497
views
Comment:
Comment: To batch correct or analyse separately?
3 months ago by
predeus
★ 1.9k
0
votes
2
replies
937
views
Comment:
Comment: Automated way to pull representative/RefSeq genome using full species name?
5 months ago by
predeus
★ 1.9k
5
votes
10
replies
937
views
Automated way to pull representative/RefSeq genome using full species name?
ncbi
taxonomy
refseq
updated 5 months ago by
LChart
2.6k • written 5 months ago by
predeus
★ 1.9k
0
votes
0
replies
473
views
Job:
Senior Bioinformatician at Wellcome Sanger Institute
UK
Sanger
job
8 months ago by
predeus
★ 1.9k
0
votes
1
reply
25k
views
Comment:
Comment: Duplicates on Illumina
9 months ago by
predeus
★ 1.9k
0
votes
1
reply
623
views
Comment:
Comment: bbduk paired-end RNA-seq trimming command
9 months ago by
predeus
★ 1.9k
2
votes
3
replies
623
views
bbduk paired-end RNA-seq trimming command
rna-seq
paired-end
bbduk
trimming
adapter
updated 9 months ago by
GenoMax
129k • written 9 months ago by
predeus
★ 1.9k
0
votes
1
reply
1.4k
views
Answer:
Answer: SCTransform and differential gene expression
9 months ago by
predeus
★ 1.9k
2
votes
0
replies
1.2k
views
Comment:
Comment: Which aligner for human WGS
9 months ago by
predeus
★ 1.9k
0
votes
0
replies
600
views
Comment:
Comment: Specific case of "bedtools intersect"
13 months ago by
predeus
★ 1.9k
2
votes
4
replies
600
views
Specific case of "bedtools intersect"
intervals
BAM
bedtools
updated 13 months ago by
Pappu
★ 2.1k • written 13 months ago by
predeus
★ 1.9k
0
votes
0
replies
4.4k
views
Comment:
Comment: GEO datasets-Single cell RNAseq analysis using seurat
14 months ago by
predeus
★ 1.9k
0
votes
0
replies
471
views
Comment:
Comment: Sequence parsing question
14 months ago by
predeus
★ 1.9k
1
vote
3
replies
471
views
Sequence parsing question
seqtk
fastq
sequence
parsing
updated 14 months ago by
cpad0112
21k • written 14 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.4k
views
Answer:
Answer: Issues with Quantification with STARsolo
16 months ago by
predeus
★ 1.9k
1
vote
1
reply
2.0k
views
Answer:
Answer: RNA velocity for smart-seq2 dataset
17 months ago by
predeus
★ 1.9k
0
votes
0
replies
728
views
Comment:
Comment: Tools similar to entrez-direct for ENA?
17 months ago by
predeus
★ 1.9k
2
votes
3
replies
728
views
Tools similar to entrez-direct for ENA?
SRA
Entrez-direct
ENA
Entrez
17 months ago by
predeus
★ 1.9k
0
votes
0
replies
2.7k
views
Comment:
Comment: Tell us what you think of the ENA browser?
17 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: A guide to modern genome assembly
20 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: A guide to modern genome assembly
20 months ago by
predeus
★ 1.9k
6
votes
10
replies
1.4k
views
A guide to modern genome assembly
illumina
polishing
genome
assembly
long
reads
updated 20 months ago by
lieven.sterck
14k • written 20 months ago by
predeus
★ 1.9k
0
votes
0
replies
987
views
Comment:
Comment: Cell cycle genes for D. melanogaster and C. elegans (for scRNA-seq analysis)
21 months ago by
predeus
★ 1.9k
4
votes
3
replies
987
views
Cell cycle genes for D. melanogaster and C. elegans (for scRNA-seq analysis)
cycle-correction
single-cell
regression
scRNA-seq
bias
updated 20 months ago by
Friederike
8.7k • written 21 months ago by
predeus
★ 1.9k
1
vote
3
replies
925
views
scRNAseq - infer type of single-cell chemistry from fastq
scRNA-seq
single cell
RNA-Seq
updated 21 months ago by
bosun1988
• 0 • written 2.3 years ago by
predeus
★ 1.9k
0
votes
0
replies
719
views
Comment:
Comment: WGS bacterial metagenomic pipeline - group comparison
21 months ago by
predeus
★ 1.9k
1
vote
2
replies
719
views
WGS bacterial metagenomic pipeline - group comparison
metagenomics
WGS
pipeline
bacterial
21 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: Can I sort my bam files with Picard MergeSamFiles?
21 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: Can I sort my bam files with Picard MergeSamFiles?
21 months ago by
predeus
★ 1.9k
0
votes
0
replies
3.0k
views
Comment:
Comment: Kraken2 with Nanopore reads
22 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.2k
views
Comment:
Comment: sugestion nanopore assembly and illumina reads
22 months ago by
predeus
★ 1.9k
4
votes
3
replies
3.0k
views
Kraken2 with Nanopore reads
kraken2
nanopore
kraken
22 months ago by
predeus
★ 1.9k
1
vote
1
reply
1.2k
views
Answer:
Answer: sugestion nanopore assembly and illumina reads
23 months ago by
predeus
★ 1.9k
0
votes
0
replies
4.5k
views
Comment:
Comment: KRAKEN2 database build with NCBI nucleotide
23 months ago by
predeus
★ 1.9k
2
votes
2
replies
1.4k
views
Comment:
Comment: Whole blood single cell RNA-seq dataset?
23 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by
predeus
★ 1.9k
0
votes
0
replies
5.3k
views
Comment:
Comment: Filtering out the spliced reads from bam file.
2.0 years ago by
predeus
★ 1.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by
predeus
★ 1.9k
0
votes
1
reply
1.3k
views
Comment:
Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by
predeus
★ 1.9k
4
votes
9
replies
1.3k
views
Truncate unevenly covered BAM file at certain coverage
samtools
bam
2.0 years ago by
predeus
★ 1.9k
0
votes
1
reply
1.3k
views
Comment:
Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by
predeus
★ 1.9k
1
vote
0
replies
1.3k
views
Comment:
Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by
predeus
★ 1.9k
0
votes
0
replies
1.5k
views
Comment:
Comment: AB SOLiD small RNA-seq data handling
2.2 years ago by
predeus
★ 1.9k
1
vote
0
replies
1.8k
views
Answer:
Answer: single cell sequencing data doublets removal tools selection
2.2 years ago by
predeus
★ 1.9k
248 results • Page
1 of 5
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6