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282
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Is it possible for genomic DNA to be sequenced in a modern RNA-seq protocol?
transcriptome genome RNA-seq
updated 9 weeks ago by 151k • written 9 weeks ago by ★ 2.1k
1
vote
2
replies
483
views
Genomes with existing T2T assemblies?
T2T genome assembly reference
updated 12 weeks ago by ★ 4.2k • written 12 weeks ago by ★ 2.1k
0
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0
replies
857
views
Answer: Answer: Unexpected spliced/unspliced percentages in scRNA-seq data
4 months ago by predeus ★ 2.1k
0
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1
reply
407
views
Answer: Answer: Spliced and unspliced counts from HIVE scRNA-seq data
4 months ago by predeus ★ 2.1k
0
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0
replies
798
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Comment: Comment: Computational way to distinguish between polyA and total RNA bulk RNA-seq
4 months ago by predeus ★ 2.1k
3
votes
3
replies
798
views
Computational way to distinguish between polyA and total RNA bulk RNA-seq
RNA-seq
4 months ago by predeus ★ 2.1k
5
votes
4
replies
6.8k
views
Kraken2 with Nanopore reads
kraken2 nanopore kraken
updated 8 months ago by ▴ 80 • written 3.9 years ago by ★ 2.1k
0
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0
replies
1.9k
views
Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
10 months ago by predeus ★ 2.1k
0
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1
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1.9k
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
10 months ago by predeus ★ 2.1k
0
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0
replies
3.0k
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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
10 months ago by predeus ★ 2.1k
1
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1
reply
1.9k
views
Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
10 months ago by predeus ★ 2.1k
0
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1
reply
1.9k
views
Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
10 months ago by predeus ★ 2.1k
3
votes
11
replies
1.9k
views
Reporting of multimapping reads by STAR and Hisat2
STAR Hisat2 multimapper
updated 10 months ago by ★ 1.5k • written 10 months ago by ★ 2.1k
1
vote
0
replies
312
views
Codon usage bias analysis when comparing RNA-seq and proteome
rna-seq proteome codon-usage-bias
10 months ago by predeus ★ 2.1k
0
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1
reply
711
views
10x VDJ (TCR/BCR) BAM to fastq
TCR VDJ BCR 10x
updated 13 months ago by 151k • written 13 months ago by ★ 2.1k
0
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1
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13k
views
Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
13 months ago by predeus ★ 2.1k
0
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1
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13k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
13 months ago by predeus ★ 2.1k
0
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0
replies
19k
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Comment: Comment: Issues installing bcl2fastq?
14 months ago by predeus ★ 2.1k
2
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2
replies
19k
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Answer: Answer: Issues installing bcl2fastq?
14 months ago by predeus ★ 2.1k
0
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0
replies
1.2k
views
Comment: Comment: API way to find "Original submitter" files in SRA?
15 months ago by predeus ★ 2.1k
2
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5
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1.2k
views
API way to find "Original submitter" files in SRA?
fastq SRA
15 months ago by predeus ★ 2.1k
1
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0
replies
1.2k
views
Answer: Answer: API way to find "Original submitter" files in SRA?
15 months ago by predeus ★ 2.1k
0
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1
reply
1.2k
views
Comment: Comment: API way to find "Original submitter" files in SRA?
15 months ago by predeus ★ 2.1k
0
votes
0
replies
2.2k
views
Answer: Answer: Get original format information from SRA metadata
15 months ago by predeus ★ 2.1k
0
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0
replies
1.6k
views
Comment: Comment: Samtools filtering based on PNEXT
18 months ago by predeus ★ 2.1k
0
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1
reply
1.6k
views
Comment: Comment: Samtools filtering based on PNEXT
18 months ago by predeus ★ 2.1k
1
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7
replies
1.6k
views
Samtools filtering based on PNEXT
CRAM filtering samtools SAM BAM
updated 18 months ago by 102k • written 18 months ago by ★ 2.1k
0
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0
replies
1.6k
views
Comment: Comment: Samtools filtering based on PNEXT
18 months ago by predeus ★ 2.1k
0
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1
reply
4.9k
views
Comment: Comment: Basecalling with dorado
19 months ago by predeus ★ 2.1k
0
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0
replies
3.6k
views
Comment: Comment: Bacterial morphology details
21 months ago by predeus ★ 2.1k
3
votes
1
reply
1.1k
views
R package to link NCBI taxonomy ID to bacterial properties (Gram stain, aerobe/anaerobe, etc)
R NCBI bacteria taxonomy
updated 21 months ago by 8.8k • written 21 months ago by ★ 2.1k
0
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0
replies
1.4k
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Answer: Answer: SRA obtained metagenomic reads appears to corrupt - cannot work on SingleM
21 months ago by predeus ★ 2.1k
2
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0
replies
1.1k
views
Answer: Answer: How can I figure out where a mouse (C57BL/6J) genome is heterozygous?
21 months ago by predeus ★ 2.1k
0
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0
replies
1.2k
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Comment: Comment: snRNA seq analysis - huge computational demand due to large number of entries
21 months ago by predeus ★ 2.1k
0
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1
reply
1.2k
views
Answer: Answer: snRNA seq analysis - huge computational demand due to large number of entries
21 months ago by predeus ★ 2.1k
0
votes
0
replies
2.6k
views
Comment: Comment: Merge BAM files from (totally) different references
21 months ago by predeus ★ 2.1k
0
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0
replies
2.6k
views
Comment: Comment: Merge BAM files from (totally) different references
21 months ago by predeus ★ 2.1k
0
votes
1
reply
2.6k
views
Comment: Comment: Merge BAM files from (totally) different references
21 months ago by predeus ★ 2.1k
0
votes
1
reply
2.6k
views
Comment: Comment: Merge BAM files from (totally) different references
21 months ago by predeus ★ 2.1k
0
votes
0
replies
2.6k
views
Comment: Comment: Merge BAM files from (totally) different references
21 months ago by predeus ★ 2.1k
1
vote
13
replies
2.6k
views
Merge BAM files from (totally) different references
bam ngs mapping
21 months ago by predeus ★ 2.1k
0
votes
1
reply
2.6k
views
Comment: Comment: Merge BAM files from (totally) different references
21 months ago by predeus ★ 2.1k
0
votes
0
replies
703
views
Comment: Comment: Clustered bacterial RefSeq?
21 months ago by predeus ★ 2.1k
2
votes
2
replies
703
views
Clustered bacterial RefSeq?
refseq clustering ANI bacteria
21 months ago by predeus ★ 2.1k
0
votes
1
reply
1.1k
views
Comment: Comment: bbduk.sh trimmer with multiple input files
22 months ago by predeus ★ 2.1k
1
vote
3
replies
1.1k
views
bbduk.sh trimmer with multiple input files
bbduk bbmap bbtools
updated 22 months ago by 151k • written 23 months ago by ★ 2.1k
0
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0
replies
2.5k
views
Comment: Comment: Whole blood single cell RNA-seq dataset?
2.1 years ago by predeus ★ 2.1k
0
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0
replies
4.2k
views
Answer: Answer: HISAT2 relaxing parameters?
2.1 years ago by predeus ★ 2.1k
3
votes
3
replies
2.2k
views
Read counting in RSEM and Salmon (alignment mode)
quantification RSEM RNA-seq Salmon
2.1 years ago by predeus ★ 2.1k
2
votes
0
replies
2.2k
views
Answer: Answer: Read counting in RSEM and Salmon (alignment mode)
2.1 years ago by predeus ★ 2.1k
293 results • Page 1 of 6
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