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584
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Is it possible for genomic DNA to be sequenced in a modern RNA-seq protocol?
transcriptome genome RNA-seq
updated 7 months ago by 154k • written 7 months ago by ★ 2.1k
1
vote
2
replies
845
views
Genomes with existing T2T assemblies?
T2T genome assembly reference
updated 8 months ago by ★ 4.4k • written 8 months ago by ★ 2.1k
0
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0
replies
1.7k
views
Answer: Answer: Unexpected spliced/unspliced percentages in scRNA-seq data
9 months ago by predeus ★ 2.1k
0
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1
reply
712
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Answer: Answer: Spliced and unspliced counts from HIVE scRNA-seq data
9 months ago by predeus ★ 2.1k
0
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0
replies
1.2k
views
Comment: Comment: Computational way to distinguish between polyA and total RNA bulk RNA-seq
10 months ago by predeus ★ 2.1k
3
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3
replies
1.2k
views
Computational way to distinguish between polyA and total RNA bulk RNA-seq
RNA-seq
10 months ago by predeus ★ 2.1k
5
votes
4
replies
7.9k
views
Kraken2 with Nanopore reads
kraken2 nanopore kraken
updated 14 months ago by ▴ 80 • written 4.3 years ago by ★ 2.1k
0
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0
replies
2.8k
views
Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
16 months ago by predeus ★ 2.1k
0
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1
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2.8k
views
Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
16 months ago by predeus ★ 2.1k
0
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0
replies
3.6k
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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
16 months ago by predeus ★ 2.1k
1
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1
reply
2.8k
views
Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
16 months ago by predeus ★ 2.1k
0
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1
reply
2.8k
views
Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
16 months ago by predeus ★ 2.1k
3
votes
11
replies
2.8k
views
Reporting of multimapping reads by STAR and Hisat2
STAR Hisat2 multimapper
updated 16 months ago by ★ 1.7k • written 16 months ago by ★ 2.1k
1
vote
0
replies
474
views
Codon usage bias analysis when comparing RNA-seq and proteome
rna-seq proteome codon-usage-bias
16 months ago by predeus ★ 2.1k
0
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1
reply
976
views
10x VDJ (TCR/BCR) BAM to fastq
TCR VDJ BCR 10x
updated 18 months ago by 154k • written 18 months ago by ★ 2.1k
0
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1
reply
17k
views
Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
19 months ago by predeus ★ 2.1k
0
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1
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17k
views
Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
19 months ago by predeus ★ 2.1k
0
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0
replies
21k
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Comment: Comment: Issues installing bcl2fastq?
20 months ago by predeus ★ 2.1k
2
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2
replies
21k
views
Answer: Answer: Issues installing bcl2fastq?
20 months ago by predeus ★ 2.1k
0
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0
replies
1.6k
views
Comment: Comment: API way to find "Original submitter" files in SRA?
20 months ago by predeus ★ 2.1k
2
votes
5
replies
1.6k
views
API way to find "Original submitter" files in SRA?
fastq SRA
20 months ago by predeus ★ 2.1k
1
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0
replies
1.6k
views
Answer: Answer: API way to find "Original submitter" files in SRA?
20 months ago by predeus ★ 2.1k
0
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1
reply
1.6k
views
Comment: Comment: API way to find "Original submitter" files in SRA?
20 months ago by predeus ★ 2.1k
0
votes
0
replies
2.6k
views
Answer: Answer: Get original format information from SRA metadata
21 months ago by predeus ★ 2.1k
0
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0
replies
2.2k
views
Comment: Comment: Samtools filtering based on PNEXT
24 months ago by predeus ★ 2.1k
0
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1
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2.2k
views
Comment: Comment: Samtools filtering based on PNEXT
24 months ago by predeus ★ 2.1k
1
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7
replies
2.2k
views
Samtools filtering based on PNEXT
CRAM filtering samtools SAM BAM
updated 24 months ago by 103k • written 2.0 years ago by ★ 2.1k
0
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0
replies
2.2k
views
Comment: Comment: Samtools filtering based on PNEXT
2.0 years ago by predeus ★ 2.1k
0
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1
reply
5.9k
views
Comment: Comment: Basecalling with dorado
2.0 years ago by predeus ★ 2.1k
0
votes
0
replies
4.0k
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Comment: Comment: Bacterial morphology details
2.2 years ago by predeus ★ 2.1k
3
votes
1
reply
1.4k
views
R package to link NCBI taxonomy ID to bacterial properties (Gram stain, aerobe/anaerobe, etc)
R NCBI bacteria taxonomy
updated 2.2 years ago by 8.9k • written 2.2 years ago by ★ 2.1k
0
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0
replies
1.7k
views
Answer: Answer: SRA obtained metagenomic reads appears to corrupt - cannot work on SingleM
2.2 years ago by predeus ★ 2.1k
2
votes
0
replies
1.5k
views
Answer: Answer: How can I figure out where a mouse (C57BL/6J) genome is heterozygous?
2.2 years ago by predeus ★ 2.1k
0
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0
replies
1.7k
views
Comment: Comment: snRNA seq analysis - huge computational demand due to large number of entries
2.2 years ago by predeus ★ 2.1k
0
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1
reply
1.7k
views
Answer: Answer: snRNA seq analysis - huge computational demand due to large number of entries
2.2 years ago by predeus ★ 2.1k
0
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0
replies
3.3k
views
Comment: Comment: Merge BAM files from (totally) different references
2.2 years ago by predeus ★ 2.1k
0
votes
0
replies
3.3k
views
Comment: Comment: Merge BAM files from (totally) different references
2.2 years ago by predeus ★ 2.1k
0
votes
1
reply
3.3k
views
Comment: Comment: Merge BAM files from (totally) different references
2.2 years ago by predeus ★ 2.1k
0
votes
1
reply
3.3k
views
Comment: Comment: Merge BAM files from (totally) different references
2.2 years ago by predeus ★ 2.1k
0
votes
0
replies
3.3k
views
Comment: Comment: Merge BAM files from (totally) different references
2.2 years ago by predeus ★ 2.1k
1
vote
13
replies
3.3k
views
Merge BAM files from (totally) different references
bam ngs mapping
2.2 years ago by predeus ★ 2.1k
0
votes
1
reply
3.3k
views
Comment: Comment: Merge BAM files from (totally) different references
2.2 years ago by predeus ★ 2.1k
0
votes
0
replies
975
views
Comment: Comment: Clustered bacterial RefSeq?
2.3 years ago by predeus ★ 2.1k
2
votes
2
replies
975
views
Clustered bacterial RefSeq?
refseq clustering ANI bacteria
2.3 years ago by predeus ★ 2.1k
0
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1
reply
1.3k
views
Comment: Comment: bbduk.sh trimmer with multiple input files
2.3 years ago by predeus ★ 2.1k
1
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3
replies
1.3k
views
bbduk.sh trimmer with multiple input files
bbduk bbmap bbtools
updated 2.3 years ago by 154k • written 2.4 years ago by ★ 2.1k
0
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0
replies
2.9k
views
Comment: Comment: Whole blood single cell RNA-seq dataset?
2.5 years ago by predeus ★ 2.1k
0
votes
0
replies
4.8k
views
Answer: Answer: HISAT2 relaxing parameters?
2.5 years ago by predeus ★ 2.1k
3
votes
3
replies
3.0k
views
Read counting in RSEM and Salmon (alignment mode)
quantification RSEM RNA-seq Salmon
2.5 years ago by predeus ★ 2.1k
2
votes
0
replies
3.0k
views
Answer: Answer: Read counting in RSEM and Salmon (alignment mode)
2.5 years ago by predeus ★ 2.1k
293 results • Page 1 of 6
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