Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.4k
views
Comment: Comment: Whole blood single cell RNA-seq dataset?
4 weeks ago by predeus ★ 1.9k
0
votes
0
replies
2.7k
views
Answer: Answer: HISAT2 relaxing parameters?
5 weeks ago by predeus ★ 1.9k
3
votes
3
replies
360
views
Read counting in RSEM and Salmon (alignment mode)
quantification RSEM RNA-seq Salmon
5 weeks ago by predeus ★ 1.9k
2
votes
0
replies
360
views
Answer: Answer: Read counting in RSEM and Salmon (alignment mode)
5 weeks ago by predeus ★ 1.9k
1
vote
0
replies
360
views
Comment: Comment: Read counting in RSEM and Salmon (alignment mode)
5 weeks ago by predeus ★ 1.9k
0
votes
0
replies
152
views
Add HI:i:<n> tag to a BAM file
SAM hisat2 STAR tag BAM
9 weeks ago by predeus ★ 1.9k
2
votes
0
replies
497
views
Comment: Comment: To batch correct or analyse separately?
3 months ago by predeus ★ 1.9k
0
votes
2
replies
937
views
Comment: Comment: Automated way to pull representative/RefSeq genome using full species name?
5 months ago by predeus ★ 1.9k
5
votes
10
replies
937
views
Automated way to pull representative/RefSeq genome using full species name?
ncbi taxonomy refseq
updated 5 months ago by 2.6k • written 5 months ago by ★ 1.9k
0
votes
0
replies
473
views
Job: Senior Bioinformatician at Wellcome Sanger Institute
UK Sanger job
8 months ago by predeus ★ 1.9k
0
votes
1
reply
25k
views
Comment: Comment: Duplicates on Illumina
9 months ago by predeus ★ 1.9k
0
votes
1
reply
623
views
Comment: Comment: bbduk paired-end RNA-seq trimming command
9 months ago by predeus ★ 1.9k
2
votes
3
replies
623
views
bbduk paired-end RNA-seq trimming command
rna-seq paired-end bbduk trimming adapter
updated 9 months ago by 129k • written 9 months ago by ★ 1.9k
0
votes
1
reply
1.4k
views
Answer: Answer: SCTransform and differential gene expression
9 months ago by predeus ★ 1.9k
2
votes
0
replies
1.2k
views
Comment: Comment: Which aligner for human WGS
9 months ago by predeus ★ 1.9k
0
votes
0
replies
600
views
Comment: Comment: Specific case of "bedtools intersect"
13 months ago by predeus ★ 1.9k
2
votes
4
replies
600
views
Specific case of "bedtools intersect"
intervals BAM bedtools
updated 13 months ago by ★ 2.1k • written 13 months ago by ★ 1.9k
0
votes
0
replies
4.4k
views
Comment: Comment: GEO datasets-Single cell RNAseq analysis using seurat
14 months ago by predeus ★ 1.9k
0
votes
0
replies
471
views
Comment: Comment: Sequence parsing question
14 months ago by predeus ★ 1.9k
1
vote
3
replies
471
views
Sequence parsing question
seqtk fastq sequence parsing
updated 14 months ago by 21k • written 14 months ago by ★ 1.9k
0
votes
0
replies
1.4k
views
Answer: Answer: Issues with Quantification with STARsolo
16 months ago by predeus ★ 1.9k
1
vote
1
reply
2.0k
views
Answer: Answer: RNA velocity for smart-seq2 dataset
17 months ago by predeus ★ 1.9k
0
votes
0
replies
728
views
Comment: Comment: Tools similar to entrez-direct for ENA?
17 months ago by predeus ★ 1.9k
2
votes
3
replies
728
views
Tools similar to entrez-direct for ENA?
SRA Entrez-direct ENA Entrez
17 months ago by predeus ★ 1.9k
0
votes
0
replies
2.7k
views
Comment: Comment: Tell us what you think of the ENA browser?
17 months ago by predeus ★ 1.9k
0
votes
0
replies
1.4k
views
Comment: Comment: A guide to modern genome assembly
20 months ago by predeus ★ 1.9k
0
votes
0
replies
1.4k
views
Comment: Comment: A guide to modern genome assembly
20 months ago by predeus ★ 1.9k
6
votes
10
replies
1.4k
views
A guide to modern genome assembly
illumina polishing genome assembly long reads
updated 20 months ago by 14k • written 20 months ago by ★ 1.9k
0
votes
0
replies
987
views
Comment: Comment: Cell cycle genes for D. melanogaster and C. elegans (for scRNA-seq analysis)
21 months ago by predeus ★ 1.9k
4
votes
3
replies
987
views
Cell cycle genes for D. melanogaster and C. elegans (for scRNA-seq analysis)
cycle-correction single-cell regression scRNA-seq bias
updated 20 months ago by 8.7k • written 21 months ago by ★ 1.9k
1
vote
3
replies
925
views
scRNAseq - infer type of single-cell chemistry from fastq
scRNA-seq single cell RNA-Seq
updated 21 months ago by • 0 • written 2.3 years ago by ★ 1.9k
0
votes
0
replies
719
views
Comment: Comment: WGS bacterial metagenomic pipeline - group comparison
21 months ago by predeus ★ 1.9k
1
vote
2
replies
719
views
WGS bacterial metagenomic pipeline - group comparison
metagenomics WGS pipeline bacterial
21 months ago by predeus ★ 1.9k
0
votes
0
replies
1.3k
views
Comment: Comment: Can I sort my bam files with Picard MergeSamFiles?
21 months ago by predeus ★ 1.9k
0
votes
0
replies
1.3k
views
Comment: Comment: Can I sort my bam files with Picard MergeSamFiles?
21 months ago by predeus ★ 1.9k
0
votes
0
replies
3.0k
views
Comment: Comment: Kraken2 with Nanopore reads
22 months ago by predeus ★ 1.9k
0
votes
0
replies
1.2k
views
Comment: Comment: sugestion nanopore assembly and illumina reads
22 months ago by predeus ★ 1.9k
4
votes
3
replies
3.0k
views
Kraken2 with Nanopore reads
kraken2 nanopore kraken
22 months ago by predeus ★ 1.9k
1
vote
1
reply
1.2k
views
Answer: Answer: sugestion nanopore assembly and illumina reads
23 months ago by predeus ★ 1.9k
0
votes
0
replies
4.5k
views
Comment: Comment: KRAKEN2 database build with NCBI nucleotide
23 months ago by predeus ★ 1.9k
2
votes
2
replies
1.4k
views
Comment: Comment: Whole blood single cell RNA-seq dataset?
23 months ago by predeus ★ 1.9k
0
votes
0
replies
1.3k
views
Comment: Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by predeus ★ 1.9k
0
votes
0
replies
5.3k
views
Comment: Comment: Filtering out the spliced reads from bam file.
2.0 years ago by predeus ★ 1.9k
0
votes
0
replies
1.3k
views
Comment: Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by predeus ★ 1.9k
0
votes
1
reply
1.3k
views
Comment: Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by predeus ★ 1.9k
4
votes
9
replies
1.3k
views
Truncate unevenly covered BAM file at certain coverage
samtools bam
2.0 years ago by predeus ★ 1.9k
0
votes
1
reply
1.3k
views
Comment: Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by predeus ★ 1.9k
1
vote
0
replies
1.3k
views
Comment: Comment: Truncate unevenly covered BAM file at certain coverage
2.0 years ago by predeus ★ 1.9k
0
votes
0
replies
1.5k
views
Comment: Comment: AB SOLiD small RNA-seq data handling
2.2 years ago by predeus ★ 1.9k
1
vote
0
replies
1.8k
views
Answer: Answer: single cell sequencing data doublets removal tools selection
2.2 years ago by predeus ★ 1.9k
248 results • Page 1 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6