User: kanwarjag

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kanwarjag900
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900
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United States
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1 week, 6 days ago
Joined:
5 years, 9 months ago
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Posts by kanwarjag

<prev • 315 results • page 1 of 32 • next >
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Question about using Xlstat
... I understand bioinformatics communities has some reservation about using Excel. However, I in order to communicate with fellow colleague (biologist) i have a clarification about using Xlstat. I have expression count matrix as shown @ https://ibb.co/eLMJzp It is a simple two group comparison C vs T. ...
rna-seq written 14 days ago by kanwarjag900 • updated 13 days ago by nlorenzi10
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Disease specific mutation database (non cancer)
... Is there any database that may allow to quay one or two particular genes and provide information about the association of mutations of that gene with disease progression/ survival ? There are few web databases to quay TCGA/ cancer data but I could not find the one related to IBD or Crohn's or relate ...
next-gen written 8 weeks ago by kanwarjag900 • updated 27 days ago by Biostar ♦♦ 20
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p-value or log2 FC to z score
... I have a table of differential expressed genes with each gene - FDR p vale and Log2 Fc . Is there an online or easy method to convert these p values to z score? Thanks ...
rna-seq written 9 weeks ago by kanwarjag900 • updated 9 weeks ago by h.mon19k
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Answer: A: filtering a z score file
... Unfortunately it is an out put of a standard tool Altanalyze and I could not get any reply from authors. Do you have any suggestion of a standard tool that can help me in this? Thanks ...
written 10 weeks ago by kanwarjag900
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filtering a z score file
... I analyzed Sc-RNAseq data set and has a z value score for each cell and probable cell type. The file looks like : type Cell1 Cell2 Cell3 Cell4 Cell5 Endoderm_ 3.496226196 1.869410134 1.526973971 0.7 ...
rna-seq written 10 weeks ago by kanwarjag900 • updated 9 weeks ago by rob.costa1234150
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Altanalyze output question
... Can Altanlayze assign each cell a phenotype, while analyzing RNAseq data ? Thanks ...
rna-seq written 11 weeks ago by kanwarjag900 • updated 10 weeks ago by Nathan Salomonis40
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filter data based on values
... I have a very simple question, but sometime one get stuck with simple problems. I have a data file with 500 rows and 2000 columns. I want to filter and subset this data based on if cells have value more than or equal to 2. I know filter of columns is easy. but how can I subset this data retaining th ...
general written 11 weeks ago by kanwarjag900 • updated 11 weeks ago by goodez260
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STREAM for identifying cell type
... Has anyone used http://xcell.ucsf.edu/. I am trying to find how one can find cell identity from this tool. Its out put gives me p values in separate file as well score in another file for all genes across cells. Has any one used this tool. The publiaction is https://link.springer.com/epdf/10.1186 ...
xcell rna-seq cell-type enrichment written 3 months ago by kanwarjag900 • updated 3 months ago by Kevin Blighe28k
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Similar samples in RNAseq
... I have a data set of 5 RNAseq samples and want to see which samples are close to stem cell population corresponding to one sample. What should be the best option to perform such analysis? If I have to perform unsupervised clustering then will SD will be good parameter to select most variable genes ...
rna-seq written 4 months ago by kanwarjag900 • updated 11 weeks ago by Biostar ♦♦ 20
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identification of cell lineage tools
... Is there a tool that can help me to identify cell lineage from differential expression of genes? Thanks ...
rna-seq written 8 months ago by kanwarjag900 • updated 8 months ago by igor6.6k

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Popular Question 7 weeks ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 7 weeks ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
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Popular Question 4 months ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
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Popular Question 7 months ago, created a question with more than 1,000 views. For log ratio in gene expression array
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Popular Question 7 months ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
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