User: kanwarjag

gravatar for kanwarjag
kanwarjag890
Reputation:
890
Status:
Trusted
Location:
United States
Last seen:
17 hours ago
Joined:
5 years, 7 months ago
Email:
k********@gmail.com

about me

Posts by kanwarjag

<prev • 312 results • page 1 of 32 • next >
0
votes
2
answers
123
views
2
answers
Answer: A: filtering a z score file
... Unfortunately it is an out put of a standard tool Altanalyze and I could not get any reply from authors. Do you have any suggestion of a standard tool that can help me in this? Thanks ...
written 5 days ago by kanwarjag890
0
votes
2
answers
123
views
2
answers
filtering a z score file
... I analyzed Sc-RNAseq data set and has a z value score for each cell and probable cell type. The file looks like : type Cell1 Cell2 Cell3 Cell4 Cell5 Endoderm_ 3.496226196 1.869410134 1.526973971 0.7 ...
rna-seq written 5 days ago by kanwarjag890 • updated 4 days ago by rob.costa1234150
0
votes
1
answer
102
views
1
answer
Altanalyze output question
... Can Altanlayze assign each cell a phenotype, while analyzing RNAseq data ? Thanks ...
rna-seq written 15 days ago by kanwarjag890 • updated 7 days ago by Nathan Salomonis40
1
vote
2
answers
112
views
2
answers
filter data based on values
... I have a very simple question, but sometime one get stuck with simple problems. I have a data file with 500 rows and 2000 columns. I want to filter and subset this data based on if cells have value more than or equal to 2. I know filter of columns is easy. but how can I subset this data retaining th ...
general written 17 days ago by kanwarjag890 • updated 17 days ago by goodez240
0
votes
0
answers
123
views
0
answers
STREAM for identifying cell type
... Has anyone used http://xcell.ucsf.edu/. I am trying to find how one can find cell identity from this tool. Its out put gives me p values in separate file as well score in another file for all genes across cells. Has any one used this tool. The publiaction is https://link.springer.com/epdf/10.1186 ...
xcell rna-seq cell-type enrichment written 27 days ago by kanwarjag890 • updated 27 days ago by Kevin Blighe24k
0
votes
0
answers
148
views
0
answers
Similar samples in RNAseq
... I have a data set of 5 RNAseq samples and want to see which samples are close to stem cell population corresponding to one sample. What should be the best option to perform such analysis? If I have to perform unsupervised clustering then will SD will be good parameter to select most variable genes ...
rna-seq written 9 weeks ago by kanwarjag890 • updated 13 days ago by Biostar ♦♦ 20
0
votes
1
answer
236
views
1
answer
identification of cell lineage tools
... Is there a tool that can help me to identify cell lineage from differential expression of genes? Thanks ...
rna-seq written 6 months ago by kanwarjag890 • updated 6 months ago by igor6.3k
0
votes
2
answers
893
views
2
answers
Comment: A: pathway for single cell RNA-seq
... I have already analyzed the data and has top differentially expressed genes specific for each cluster. Instead of using known markers I want to use enrichment/ pathway analysis that what type of cells are in each cluster. Apology If my original question was not explained clearly. ...
written 6 months ago by kanwarjag890
4
votes
2
answers
893
views
7 follow
2
answers
pathway for single cell RNA-seq
... I have a single cell RNA-seq data form 10X genomics. I want to perform pathway analysis of top 50 genes of each cluster on the the basis of DE. These clusters represent cells with similar expression of genes. So in pathway analysis of these top 50 genes I want to identify what possible type of cell ...
pathway written 6 months ago by kanwarjag890 • updated 6 months ago by igor6.3k
0
votes
0
answers
271
views
0
answers
Comment: C: Question about Colon and small intestine size
... This appears to be a high school assignment. Try to google all this. ...
written 7 months ago by kanwarjag890

Latest awards to kanwarjag

Popular Question 14 days ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 17 days ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 27 days ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Popular Question 9 weeks ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
Popular Question 4 months ago, created a question with more than 1,000 views. For lift-over hg19 to GRch38
Popular Question 4 months ago, created a question with more than 1,000 views. For heatmap for a predetermined order of rows
Popular Question 4 months ago, created a question with more than 1,000 views. For co-expression of genes in normal and cancer
Popular Question 4 months ago, created a question with more than 1,000 views. For DEseq/ EdgeR RNaseq calculation of fold change
Popular Question 4 months ago, created a question with more than 1,000 views. For log ratio in gene expression array
Great Question 4 months ago, created a question with more than 5,000 views. For Converting Protein Names To Gene Ids
Popular Question 4 months ago, created a question with more than 1,000 views. For CPG island annotation with gene
Popular Question 4 months ago, created a question with more than 1,000 views. For pllotting tag density across TSS and TES
Popular Question 4 months ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
Popular Question 4 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 5 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 5 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 5 months ago, created a question with more than 1,000 views. For breast cancer subtype
Popular Question 5 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Appreciated 7 months ago, created a post with more than 5 votes. For iontorrent RNAseq alignment
Popular Question 7 months ago, created a question with more than 1,000 views. For breast cancer subtype
Popular Question 7 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 7 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 7 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1049 users visited in the last hour