User: kanwarjag

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kanwarjag1000
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United States
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Joined:
6 years, 10 months ago
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Posts by kanwarjag

<prev • 338 results • page 1 of 34 • next >
6
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extracting one gene rpkm from 200 txt files
... I have 200 txt file of different samples and want to extract one genes read count from all these files. What should be the easiest way? Understand a basic question but sometime you get lost and googling also may not lead you any where. Thanks ...
rna-seq written 22 days ago by kanwarjag1000
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Drug resistance gene expression of cancer
... I am looking for gene expression profile of patients/ cell lines related to liver cancer cases that are resistance to common drug such as sorafenib. Is there such open source database? google yield gene drug interaction db but nothing about resistance expression profiles. Thanks ...
drug resistnace chamotherapy cancer written 7 weeks ago by kanwarjag1000
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Comment: C: normalizing three independent RNAseq samples
... Three independent samples from same lab differentiated to a particular same phenotype ...
written 3 months ago by kanwarjag1000
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normalizing three independent RNAseq samples
... I have three RNAseq sample's read count and want to normalize the data with in each sample. What are my options. I was thinking of scaling data on the set of genes whose expression has not changed in all three samples. Any suggetsion? Thanks ...
rna-seq written 3 months ago by kanwarjag1000
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Answer: A: Relapse vs gene expression figure
... Any suggestion on my question? ...
written 3 months ago by kanwarjag1000
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209
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Relapse vs gene expression figure
... I want to show relationship between down regulation and up regulation of expression of a gene with that of patients relapse status in cancer. However, I dont have enough data to plot KM/ Survival curve. All I have is disease status and gene expression after 1 year and 3 years. I was thinking of mak ...
figure written 3 months ago by kanwarjag1000
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To show methylation loci
... I want to show hyer/ hypo methylation of two loci in 5 samples. Is there a way we can show by figure instead of showing by just table? Any suggestion. Thanks ...
methayltion written 5 months ago by kanwarjag1000 • updated 5 months ago by lshepard370
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mutually exclusive expression of two genes
... I want to show that expression of two genes is mutually exclusive. One way is showing a negative correlation in expression. Is there any other alternative way that I can show such exclusivity of two genes expression pattern for publication purposes? Thanks ...
rna-seq written 5 months ago by kanwarjag1000
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Comment: C: TARGET bulk download
... I am able to solve this issue. but dont know how to delete question. ...
written 5 months ago by kanwarjag1000
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TARGET bulk download
... What is the best way to download all the sequences from an ftp site -ftp://caftpd.nci.nih.gov/pub/OCG-DCC/TARGET/ALL/gene_expression_array/Phase2/L1/ Thanks ...
sequence written 5 months ago by kanwarjag1000

Latest awards to kanwarjag

Popular Question 5 weeks ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Great Question 12 weeks ago, created a question with more than 5,000 views. For GRCH38 and hg19
Popular Question 12 weeks ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 12 weeks ago, created a question with more than 1,000 views. For log ratio in gene expression array
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 12 weeks ago, created a question with more than 1,000 views. For DEseq/ EdgeR RNaseq calculation of fold change
Popular Question 12 weeks ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
Popular Question 12 weeks ago, created a question with more than 1,000 views. For logistic regression subset data
Student 3 months ago, asked a question with at least 3 up-votes. For iontorrent RNAseq alignment
Popular Question 3 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 3 months ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Popular Question 5 months ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Popular Question 5 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 5 months ago, created a question with more than 1,000 views. For ncRNA gencode files
Epic Question 5 months ago, created a question with more than 10,000 views. For question about GSEA
Popular Question 5 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 6 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Epic Question 6 months ago, created a question with more than 10,000 views. For question about GSEA
Student 6 months ago, asked a question with at least 3 up-votes. For iontorrent RNAseq alignment
Popular Question 7 months ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Popular Question 7 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 7 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 8 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 8 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 8 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations

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