User: kanwarjag

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kanwarjag1.0k
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Posts by kanwarjag

<prev • 346 results • page 1 of 35 • next >
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question about moncole 2/3
... IS it possible to assign a starting cell type for peusdotime trajectory in Monocle 2 or 3? I am analyzing RNAseq. Could not find on the Monocole manual or on google. ...
rna-seq written 5 days ago by kanwarjag1.0k
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GUI based Trajectory tool for RNA-seq
... I am trying to find if there any online GUI based free software that can perform trajectory analysis on single-cell RNAseq. ...
rna-seq written 12 days ago by kanwarjag1.0k
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filtering of genes before unsupervized analysis
... I have an expression array data and want to from PCA or heat map. Do we filter noninformative genes such as no expression or zero counts in RNAseq before doing any of such analysis? Why it is necessary to filter such genes. Thanks ...
gene expression written 19 days ago by kanwarjag1.0k
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Comment: C: Question about FC/ ratio
... Thanks. So RamsRS has suggested "And if your numbers are starting off in log space (since you have A - B depicting a ratio), then C is already a log value and does not need to transform to log space". @ https://www.biostars.org/p/177925/ I want to clarify this issue; so one has not to transform lo ...
written 8 weeks ago by kanwarjag1.0k
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Question about FC/ ratio
... I have to clarify another step from my previous question @ https://www.biostars.org/p/177925/ If two values are A-32 B -18 If I have to present data as FC and log FC For FC it will be 32-18= 1.7 this will be a linear FC and log FC= LogA-logB will be 5-4.1=1.19= 0.2 when we use log values of A ...
expression written 8 weeks ago by kanwarjag1.0k • updated 8 weeks ago by JC9.3k
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how to create a scatter plot as shown
... I have following columns: 1.genes expressed in both protein and RNAseq (Log2FC protein and RNAseq) 2. genes expressed in RNAseq (log2 FC RNAseq) 3.genes expressed in protein (log2FC protein) I cold not figure out how we have two axis of log2FC RNAseq vs log2FC protein and then plot all the rest of ...
question about figure written 10 weeks ago by kanwarjag1.0k • updated 10 weeks ago by h.mon29k
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Mouse embryonic expression database
... I am looking for gene expression dataset for mouse embryos. Google lead to various transcription datasets. Any suggestion Thanks ...
expression written 3 months ago by kanwarjag1.0k
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lincRNA in single cell RNAseq
... I was wondering if I use publically available 10X sequenced single-cell RNAseq data, will I be able to get microRNA and lincRNAs from such data ? Thanks ...
rna-seq written 3 months ago by kanwarjag1.0k
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extracting one gene rpkm from 200 txt files
... I have 200 txt file of different samples and want to extract one genes read count from all these files. What should be the easiest way? Understand a basic question but sometime you get lost and googling also may not lead you any where. Thanks ...
rna-seq written 4 months ago by kanwarjag1.0k
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Drug resistance gene expression of cancer
... I am looking for gene expression profile of patients/ cell lines related to liver cancer cases that are resistance to common drug such as sorafenib. Is there such open source database? google yield gene drug interaction db but nothing about resistance expression profiles. Thanks ...
drug resistnace chamotherapy cancer written 5 months ago by kanwarjag1.0k

Latest awards to kanwarjag

Popular Question 12 days ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 5 weeks ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 7 weeks ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 9 weeks ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 3 months ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 3 months ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
Popular Question 3 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 4 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 4 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 6 months ago, created a question with more than 1,000 views. For log ratio in gene expression array
Popular Question 6 months ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 6 months ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
Great Question 6 months ago, created a question with more than 5,000 views. For GRCH38 and hg19
Popular Question 6 months ago, created a question with more than 1,000 views. For DEseq/ EdgeR RNaseq calculation of fold change
Popular Question 6 months ago, created a question with more than 1,000 views. For logistic regression subset data
Popular Question 6 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Student 6 months ago, asked a question with at least 3 up-votes. For iontorrent RNAseq alignment
Popular Question 7 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 7 months ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Popular Question 8 months ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 8 months ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Popular Question 8 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 9 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Epic Question 9 months ago, created a question with more than 10,000 views. For question about GSEA
Popular Question 9 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations

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