User: kanwarjag

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kanwarjag930
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930
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United States
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25 minutes ago
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6 years, 2 months ago
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Posts by kanwarjag

<prev • 323 results • page 1 of 33 • next >
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Drug target in specific cancer database
... I am looking for a drug targets for cancer mutation database. My aim is to find genes that are responsible for resistant of lung cancer to specific drug. Is there any database that can be used. I google there are different databases that target different mutations but they are either based on cell ...
genome written 2 hours ago by kanwarjag930
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TALL (acute lymphoblastic leukaemia) TCGA data vs other Cancers
... I have to compare expression of a single gene in TALL and all other cancers. There are several tools- C Bioportal, GEPIA, Firebrowser but I could not find TALL cancer in any of these. Is there any other web tool where I I can compare TALL expression along with other cancers? Thanks ...
rna-seq written 10 days ago by kanwarjag930
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Single cell RNAseq differential genome wide expression significance
... In single cell RNA seq about 5-10 % genome is covered during sequencing. Now is it reasonable to study such set of differential expressed genes to identify a global regulatory network. The question is what should be best to get an overview of all (most) regulatory mechanisms at a genome level - Sin ...
rna-seq written 12 days ago by kanwarjag930 • updated 12 days ago by geek_y9.1k
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sequencing depth in ScRNASeq
... In 10X single cell RNAseq how can be achieve a good sequencing depth to detect lowly expressed genes. Soemthing similar has been shown in this paper https://www.nature.com/articles/nbt.2967 to get a good sequencing depth in a microfluidics system. Is better sequencing depth is possible in micro flu ...
rna-seq written 14 days ago by kanwarjag930 • updated 14 days ago by Devon Ryan88k
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Filtering SCRNAseq dataset
... I have a DE matrix of Single cell RNAseq data for two conditions. there are 500 genes that has FDRp<0.01, FC>2. I want to reduce the list to say around 100-200 genes to make it more presentable. Is there any stringency criteria that I can use for SCRNAseq data, like sequencing depth, read co ...
rna-seq filtering written 22 days ago by kanwarjag930 • updated 21 days ago by geek_y9.1k
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Comment: C: TSS sites of GRCM38
... I tried to use the above TSS file but it is not compatible with GRCM38 and giver error that ist column annotations-NC.... can not be recognized. ...
written 24 days ago by kanwarjag930
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TSS sites of GRCM38
... How can I get TSS file (bed/ GTF) for GRCM38? I can see mm9 file but not GRCm38 Thanks ...
chip-seq tss written 24 days ago by kanwarjag930
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correlation between SCRNA-Seq and bulk RNAseq
... I have selected 1800 cells and 1600 genes from scRNAseq (Single cell RNASeq). I have a public data set of bulk RNAseq of 5 replicates. If I want to show correlation in expression of scRNA and bulk RNA seq what should be the best way to show in a figure. I can simply calculate the average expression ...
rna-seq written 3 months ago by kanwarjag930 • updated 3 months ago by Santosh Anand4.6k
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Question about using Xlstat
... I understand bioinformatics communities has some reservation about using Excel. However, I in order to communicate with fellow colleague (biologist) i have a clarification about using Xlstat. I have expression count matrix as shown @ https://ibb.co/eLMJzp It is a simple two group comparison C vs T. ...
rna-seq written 5 months ago by kanwarjag930 • updated 5 months ago by nlorenzi10
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Disease specific mutation database (non cancer)
... Is there any database that may allow to quay one or two particular genes and provide information about the association of mutations of that gene with disease progression/ survival ? There are few web databases to quay TCGA/ cancer data but I could not find the one related to IBD or Crohn's or relate ...
next-gen written 6 months ago by kanwarjag930 • updated 5 months ago by Biostar ♦♦ 20

Latest awards to kanwarjag

Popular Question 1 day ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 3 days ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 20 days ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Great Question 12 weeks ago, created a question with more than 5,000 views. For question about GSEA
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Great Question 12 weeks ago, created a question with more than 5,000 views. For GRCH38 and hg19
Popular Question 12 weeks ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
Popular Question 12 weeks ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Popular Question 5 months ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Great Question 5 months ago, created a question with more than 5,000 views. For question about GSEA
Popular Question 5 months ago, created a question with more than 1,000 views. For ncRNA gencode files
Popular Question 5 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Guru 5 months ago, received more than 100 upvotes.
Popular Question 6 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 6 months ago, created a question with more than 1,000 views. For log ratio in gene expression array
Popular Question 6 months ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
Popular Question 6 months ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Popular Question 7 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 7 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 7 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 9 months ago, created a question with more than 1,000 views. For RPKM to FPKM conversion
Popular Question 9 months ago, created a question with more than 1,000 views. For Is Genotype Info Must While Validating Mutations
Popular Question 9 months ago, created a question with more than 1,000 views. For Adapter trimming in basespace
Great Question 12 months ago, created a question with more than 5,000 views. For Converting Protein Names To Gene Ids

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